View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9720_9 (Length: 319)

Name: NF9720_9
Description: NF9720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9720_9
NF9720_9
[»] chr7 (2 HSPs)
chr7 (193-319)||(35444431-35444557)
chr7 (119-201)||(35445668-35445750)


Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 193 - 319
Target Start/End: Complemental strand, 35444557 - 35444431
Alignment:
Q  193 tattgaataacatggtaatgcaccttatacgctctccaacctatatgtttttcgagtggattaactgcactttattttacttcgcatgatgatcggatta 292  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35444557 tattaaataacatagtaatgcaccttatacgctctccaacctatatgtttttcgagtggattaactgcactttattttacttcacatgatgatcggatta 35444458  T
Q  293 gctgcacgttttacttcacattatgac 319  Q
    |||||||||||||||||||||||||||    
T  35444457 gctgcacgttttacttcacattatgac 35444431  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 35445750 - 35445668
Alignment:
Q  119 atcaaactacttatttgaacatttgtattgtgatttttattactgtaacatttttggagaaaattgattatgattattgaata 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35445750 atcaaactacttatttgaacatttgtattgtgatttttattactgtaacatttttggagaaaattgattatgattattgaata 35445668  T

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