View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9720_low_2 (Length: 260)
Name: NF9720_low_2
Description: NF9720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9720_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 37106391 - 37106146
Alignment:
| Q |
1 |
ttgttgtttttgtgacagaggattaaatttatgattttatttacaagaaattgttatatgaatattttttacccttaaacatgattagcctaacgtaata |
100 |
Q |
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| T |
37106391 |
ttgttgtttttgtgacagacgattaaatttatgattt-atttaccacaaattgttatatgaatattttttacccttaaacatgattagcctaacctaata |
37106293 |
T |
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| Q |
101 |
cttgataatggactttagtttgtgagattgcaaactgctactaatatttaagattattgcttttggttgcggatggattgagtaaaataatgttggtaat |
200 |
Q |
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| T |
37106292 |
cttgataatggattttagtttgtgagattgcaaactgctactaatatttaagattattgcttttggttgcggatggattgagtaaaataatgttggtaat |
37106193 |
T |
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| Q |
201 |
tgttttttattcaaatggttttacttataaactttactttgttgatg |
247 |
Q |
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| T |
37106192 |
tgttttttattcaaatgcttttacttataaactttactttgttgatg |
37106146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 37085765 - 37085587
Alignment:
| Q |
10 |
ttgtgacagaggattaaatttatgattttatttacaagaaattgttatatgaatattttttacccttaaacatgattagcctaacgtaatacttgataat |
109 |
Q |
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| T |
37085765 |
ttgtgacagaggattaaatttatggtttcatg----acaaagtgctaaattaatattttcaacccttaatcatgatcagcttaacctaatacttgattat |
37085670 |
T |
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| Q |
110 |
ggactttagtttgtgagattgcaaactgctactaatatttaagattattgcttttggttgcggatggattgagtaaaataatg |
192 |
Q |
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| T |
37085669 |
ggattctagtttgtgagattgctaactgcttcaaatatttgtgattattgtttttgattgctgatggattgagtaaaataatg |
37085587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 158
Target Start/End: Complemental strand, 37092270 - 37092173
Alignment:
| Q |
61 |
aatattttttacccttaaacatgattagcctaacgtaatacttgataatggactttagtttgtgagattgcaaactgctactaatatttaagattatt |
158 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||||| || |||| |||||||||||||||| | | |||||||||||||||||| ||||| |
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| T |
37092270 |
aatattttctacccttaaacatgattagcctaacctaatacttaattgtggattttagtttgtgagattactacctgctactaatatttaaggttatt |
37092173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 37092131 - 37092093
Alignment:
| Q |
209 |
attcaaatggttttacttataaactttactttgttgatg |
247 |
Q |
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| T |
37092131 |
attcaaatggttttacttatgaactttactttgttgatg |
37092093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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