View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9721_high_10 (Length: 240)
Name: NF9721_high_10
Description: NF9721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9721_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 27660905 - 27660682
Alignment:
| Q |
1 |
tgctgcttacttcaccctgctcaatcacatcaaaatccataattaggatatgtttggtaaatagcttaattacaaaactcattgaataagctattaatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27660905 |
tgctgcttacttcaccctgctcaatcacatcaaaatccataattaggatatgtttggtaaatagcttaattacaaaactcattgaataagctattaatcc |
27660806 |
T |
|
| Q |
101 |
tgtaagcttgataatcgaagagaaaatatggttaaagttaaactatattttcataaa-tttaagttgttttcatacgctccaacatgaatcaaataaatc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27660805 |
tgtaagcttgataatcgaagagaaaatatggttaaagttaaactatattttcataaattttaagttgttttcataagctccaacatgaatcaaataaatc |
27660706 |
T |
|
| Q |
200 |
attgagtaatttttgtatataacc |
223 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
27660705 |
attgagtaatttttgtatataacc |
27660682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University