View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9721_high_9 (Length: 249)

Name: NF9721_high_9
Description: NF9721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9721_high_9
NF9721_high_9
[»] chr1 (8 HSPs)
chr1 (10-249)||(26580723-26580962)
chr1 (10-178)||(33713441-33713609)
chr1 (10-89)||(8986882-8986960)
chr1 (10-89)||(25264759-25264838)
chr1 (37-170)||(14240012-14240145)
chr1 (10-89)||(27910147-27910226)
chr1 (39-114)||(7220997-7221074)
chr1 (28-94)||(10063767-10063832)
[»] chr7 (15 HSPs)
chr7 (10-182)||(9612642-9612814)
chr7 (10-182)||(9840213-9840385)
chr7 (10-180)||(9891005-9891176)
chr7 (40-181)||(2454527-2454668)
chr7 (39-140)||(10991729-10991830)
chr7 (10-101)||(23007872-23007963)
chr7 (15-114)||(24751981-24752080)
chr7 (11-89)||(6170171-6170249)
chr7 (55-182)||(4901154-4901282)
chr7 (28-114)||(21884372-21884463)
chr7 (39-115)||(10938504-10938582)
chr7 (24-87)||(2505104-2505167)
chr7 (12-89)||(19398034-19398112)
chr7 (128-178)||(20175354-20175404)
chr7 (128-181)||(2504951-2505004)
[»] scaffold0085 (1 HSPs)
scaffold0085 (10-179)||(23196-23365)
[»] chr3 (6 HSPs)
chr3 (10-181)||(26092072-26092244)
chr3 (39-178)||(21019130-21019272)
chr3 (39-173)||(23055369-23055505)
chr3 (14-100)||(18473748-18473833)
chr3 (14-89)||(20339029-20339104)
chr3 (133-181)||(11533275-11533323)
[»] chr4 (8 HSPs)
chr4 (44-181)||(19547839-19547976)
chr4 (8-181)||(20316914-20317088)
chr4 (10-153)||(22217746-22217890)
chr4 (26-119)||(23975060-23975158)
chr4 (52-114)||(19901395-19901459)
chr4 (10-79)||(15049280-15049353)
chr4 (10-79)||(15105071-15105144)
chr4 (12-69)||(4214654-4214714)
[»] chr6 (5 HSPs)
chr6 (10-184)||(9386829-9387004)
chr6 (28-175)||(16166982-16167129)
chr6 (10-171)||(32759223-32759387)
chr6 (39-119)||(10504413-10504495)
chr6 (39-119)||(3357395-3357477)
[»] chr2 (9 HSPs)
chr2 (10-181)||(18922889-18923060)
chr2 (28-166)||(34368543-34368680)
chr2 (10-112)||(27870530-27870631)
chr2 (10-180)||(18932996-18933166)
chr2 (10-89)||(25937861-25937940)
chr2 (10-119)||(8502231-8502345)
chr2 (28-123)||(30682970-30683063)
chr2 (10-68)||(8446268-8446327)
chr2 (10-61)||(12556886-12556937)
[»] chr8 (6 HSPs)
chr8 (10-181)||(26008832-26009004)
chr8 (24-93)||(18829423-18829492)
chr8 (56-138)||(24115032-24115116)
chr8 (37-91)||(24080388-24080442)
chr8 (129-182)||(45264870-45264923)
chr8 (39-87)||(45264780-45264828)
[»] chr5 (13 HSPs)
chr5 (26-180)||(25934218-25934373)
chr5 (10-178)||(17830869-17831040)
chr5 (24-182)||(28279218-28279377)
chr5 (10-88)||(13692872-13692950)
chr5 (10-180)||(20533240-20533413)
chr5 (39-171)||(111811-111945)
chr5 (37-181)||(22920131-22920277)
chr5 (39-171)||(26308371-26308505)
chr5 (29-93)||(32582833-32582897)
chr5 (26-89)||(25921993-25922057)
chr5 (143-184)||(15544789-15544830)
chr5 (10-89)||(17337010-17337086)
chr5 (10-69)||(22871619-22871682)
[»] scaffold0086 (1 HSPs)
scaffold0086 (10-91)||(13602-13683)
[»] scaffold0394 (1 HSPs)
scaffold0394 (10-178)||(10828-11002)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 26580962 - 26580723
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtct 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26580962 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtct 26580863  T
Q  110 cctctaaagcgaatcactctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacctaatgttagattcctgacatccaacata 209  Q
    ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26580862 cctctgaagcgaatcactctgagataacggtgcttagaaaggagacatacctaatattggtgcaaacgtacctaatgttagattcctgacatccaacata 26580763  T
Q  210 tcacctagagggttcttcttgaggttaacattcttaaccc 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26580762 tcacctagagggttcttcttgaggttaacattcttaaccc 26580723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 33713609 - 33713441
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtct 109  Q
    ||||||||| ||| ||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  33713609 agatgaacctctattttgtttgttggaatatttaatttaagttctttattcagttatttttcgaatcctatttaattttactatttcgtaagatttgtct 33713510  T
Q  110 cctctaaagcgaatcactctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacct 178  Q
    | ||| ||||||| ||| || | |||   || ||||| || || | |||||||||||||||| ||||||    
T  33713509 cttctgaagcgaaccaccctaaaatacaagtacttaggaaagtaacatacctaatattggtgtaaacct 33713441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 8986960 - 8986882
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaatttta 89  Q
    ||||||||| ||| |||||||||||||| ||||||||||||||||||||| |||||||||  ||||||||||||||||||    
T  8986960 agatgaacctcta-tttatttgttggattatttaatttaagttctttatttagttattttatgaatcctatttaatttta 8986882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 25264838 - 25264759
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaatttta 89  Q
    ||||||||| ||| |||||||||||||| ||||||||||||||||||||| |||||||||  ||||| ||||||||||||    
T  25264838 agatgaacctctattttatttgttggattatttaatttaagttctttatttagttattttatgaatcttatttaatttta 25264759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 170
Target Start/End: Original strand, 14240012 - 14240145
Alignment:
Q  37 taatttaatttaagttctttattcagttatttttcgaatcctatttaattttactat--tgtgtaagatttgtctcctctaaagcgaatcactctgagat 134  Q
    |||||| ||||||  | ||||||||||||||||| |||||  ||||||||||||| |  || ||||||| |||||||||| ||  | || || |||||||    
T  14240012 taattttatttaatgtatttattcagttattttttgaatcagatttaattttactgtcgtgcgtaagatctgtctcctctcaa--gtataaccctgagat 14240109  T
Q  135 aacggtgcttagaaaggtgaaatacctaatattggt 170  Q
    |||||| ||||| ||||||  |||||||||||||||    
T  14240110 aacggtacttaggaaggtggcatacctaatattggt 14240145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 27910226 - 27910147
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaatttta 89  Q
    ||||||||| ||| |||||||||||||| |||||||||   || |||||| | |||||||  ||||||||||||||||||    
T  27910226 agatgaacctctattttatttgttggattatttaattttcattttttatttatttattttatgaatcctatttaatttta 27910147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 7221074 - 7220997
Alignment:
Q  39 atttaatttaagttctttattcagttatttttcgaatcctatttaattttactat--tgtgtaagatttgtctcctct 114  Q
    |||||||||||  |||||||  |||||||||| |||||||||||||||||||| |  || | ||||||||||||||||    
T  7221074 atttaatttaaagtctttatctagttattttttgaatcctatttaattttactttcgtgcgcaagatttgtctcctct 7220997  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 10063767 - 10063832
Alignment:
Q  28 tttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactatt 94  Q
    ||||||||||| ||||||||||  | |||||||| |||||||  |||||||||||||||||||||||    
T  10063767 tttgttggatattttaatttaaagt-tttattcatttattttgggaatcctatttaattttactatt 10063832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 9612642 - 9612814
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtct 109  Q
    ||||||||| ||| ||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9612642 agatgaacctctattttgtttgttggattatttaaattaagttctttattcagttatttttcgaatcctatttaattttactattgcgtaagatttgtct 9612741  T
Q  110 cctctaaagcgaatcactctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacct 182  Q
    ||||| ||||||| ||| ||||||||   || ||||| ||||||| | |||||||||||||||||||||||||    
T  9612742 cctctgaagcgaaccaccctgagatacatgtacttaggaaggtgacaaacctaatattggtgcaaacctacct 9612814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 9840213 - 9840385
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtct 109  Q
    ||||||||| ||| ||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9840213 agatgaacctctattttgtttgttggattatttaaattaagttctttattcagttatttttcgaatcctatttaattttactattgcgtaagatttgtct 9840312  T
Q  110 cctctaaagcgaatcactctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacct 182  Q
    ||||| ||||||| ||| ||||||||   || ||||| ||||||| | |||||||||||||||||||||||||    
T  9840313 cctctgaagcgaaccaccctgagatacatgtacttaggaaggtgacaaacctaatattggtgcaaacctacct 9840385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 9891176 - 9891005
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtct 109  Q
    ||||||||| ||| |||||||||||||| |||| |||||||||||||||||| |||||||  ||||||||||| |||||| |||||||||| |||||| |    
T  9891176 agatgaacctctattttatttgttggattatttcatttaagttctttattcaattattttatgaatcctatttcattttattattgtgtaaaatttgttt 9891077  T
Q  110 cctctaaagcgaa-tcactctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctac 180  Q
    | |||||||| || |  | ||||||||||||| |||||    |||| |||||||||||||||| ||||||||    
T  9891076 cttctaaagcaaactgtccctgagataacggtacttagggtagtgacatacctaatattggtgaaaacctac 9891005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 181
Target Start/End: Complemental strand, 2454668 - 2454527
Alignment:
Q  40 tttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatcactctgagataacgg 139  Q
    |||| ||||||||||| |||   |||||||  |||||||||||||||||||||| | |||| ||||||||||||| ||||||||||| |||||||||  |    
T  2454668 tttagtttaagttcttcattattttattttatgaatcctatttaattttactatagcgtaatatttgtctcctctgaagcgaatcaccctgagataatag 2454569  T
Q  140 tgcttagaaaggtgaaatacctaatattggtgcaaacctacc 181  Q
    | ||||| ||||||| || ||||||||||||| |||||||||    
T  2454568 tacttaggaaggtgacattcctaatattggtgtaaacctacc 2454527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 140
Target Start/End: Original strand, 10991729 - 10991830
Alignment:
Q  39 atttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatcactctgagataacg 138  Q
    ||||||| || ||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||| | ||| ||| ||| || ||||||||    
T  10991729 atttaatatatgttctttattcagttattttttgaatcctatttaattttactattgcgtaatatttgtctcctgtgaagtgaaccaccctaagataacg 10991828  T
Q  139 gt 140  Q
    ||    
T  10991829 gt 10991830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 23007963 - 23007872
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaag 101  Q
    ||||||||| ||| |||||||||||||| ||||||||||||||||||||||| |||||||   |||| | ||||||||||||||||||||||    
T  23007963 agatgaacctctattttatttgttggattatttaatttaagttctttattcaattattttgttaatcttgtttaattttactattgtgtaag 23007872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 24751981 - 24752080
Alignment:
Q  15 aaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctct 114  Q
    |||||||| ||| |||||||||| | || ||||||||| ||||||||| ||| ||||||||||||||||||||||||| |  ||||||||||||||||||    
T  24751981 aaccactattttgtttgttggattaatttatttaagttttttattcagatatatttcgaatcctatttaattttactagtacgtaagatttgtctcctct 24752080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 6170249 - 6170171
Alignment:
Q  11 gatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaatttta 89  Q
    |||||||| ||| |||||||||| ||| ||||||||||||||||||||| |||||||||  ||||||||| | ||||||    
T  6170249 gatgaacctctattttatttgttagattatttaatttaagttctttatttagttattttatgaatcctatattatttta 6170171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 182
Target Start/End: Original strand, 4901154 - 4901282
Alignment:
Q  55 ttattcagttatttttcgaatcctatttaattt-tactattgtgtaagatttgtctcctctaaagcgaatcactctgagataacggtgcttagaaaggtg 153  Q
    ||||||||||||||||  ||||||||||||||| |  |  || |||||||||||||||| | ||| ||| ||| ||||||||| |||  |||| ||||||    
T  4901154 ttattcagttatttttttaatcctatttaatttattgtcatgcgtaagatttgtctcctttgaagtgaaccaccctgagataatggtatttaggaaggtg 4901253  T
Q  154 aaatacctaatattggtgcaaacctacct 182  Q
    | || ||||||||||||||| ||| ||||    
T  4901254 acattcctaatattggtgcataccaacct 4901282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 21884372 - 21884463
Alignment:
Q  28 tttgttggataattta----atttaagttctttattcagttatttttcgaatcctatttaattttactat--tgtgtaagatttgtctcctct 114  Q
    ||||||||||||||||    ||||||  |||||||||| ||||||||||||| |||||||||||||||||  || ||||||||||||||||||    
T  21884372 tttgttggataatttattaaatttaaagtctttattca-ttatttttcgaatgctatttaattttactatcgtgcgtaagatttgtctcctct 21884463  T

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Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 10938582 - 10938504
Alignment:
Q  39 atttaatttaagttctttattcagttatttttcgaatcctatttaattttactat--tgtgtaagatttgtctcctcta 115  Q
    |||||||||||  | ||||||||||||||| ||||||  |||||||||||||| |  ||||||||||||||||||||||    
T  10938582 atttaatttaaagtttttattcagttatttctcgaatgttatttaattttactgtggtgtgtaagatttgtctcctcta 10938504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 2505167 - 2505104
Alignment:
Q  24 tttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattt 87  Q
    |||||||||||||| ||||||||||||||||||||| || ||||||  ||||| ||||| ||||    
T  2505167 tttatttgttggattatttaatttaagttctttattaagatattttatgaatcgtatttgattt 2505104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 19398034 - 19398112
Alignment:
Q  12 atgaaccactaatttatttgttggat-aatttaatttaagttctttattcagttatttttcgaatcctatttaatttta 89  Q
    ||||||| ||| |||||||||||||| |||||||| |||||| ||| ||  ||||||||  || |||||||||||||||    
T  19398034 atgaacctctattttatttgttggatcaatttaatataagttttttgttttgttattttatgagtcctatttaatttta 19398112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 20175404 - 20175354
Alignment:
Q  128 ctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacct 178  Q
    |||||||||| || ||||| ||||||| |||||||||||||||||| ||||    
T  20175404 ctgagataacagtacttaggaaggtgacatacctaatattggtgcatacct 20175354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 2505004 - 2504951
Alignment:
Q  128 ctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacc 181  Q
    ||||||||||||| |||||  | |||| |||||||||||||||| |||||||||    
T  2505004 ctgagataacggtacttagggaagtgacatacctaatattggtgaaaacctacc 2504951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 23365 - 23196
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtct 109  Q
    ||||||||| ||| | | |||||||||| |||| |||||||||||||||| | ||||||||| |||||||||||||||||||||||  ||||||||||||    
T  23365 agatgaacctctattatgtttgttggattatttgatttaagttctttatttatttatttttcaaatcctatttaattttactattgcataagatttgtct 23266  T
Q  110 cctctaaagcgaatcactctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaaccta 179  Q
    ||| | |||||||  ||| |||||||||||| ||||| ||||||| |||||||||||||||| |||||||    
T  23265 cctttgaagcgaaaaactgtgagataacggtacttaggaaggtgacatacctaatattggtgaaaaccta 23196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 26092244 - 26092072
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtct 109  Q
    ||||||||| ||| ||| |||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||  ||| ||||||||    
T  26092244 agatgaacctctattttgtttgttggattatttaatttaagttctttattcagttattttatgaatcctatttaattttactattgcataacatttgtct 26092145  T
Q  110 cctctaaagcgaatcactctgagataacggtgcttagaaaggtga-aatacctaatattggtgcaaacctacc 181  Q
    ||||| ||| |||  || |||| |||||||| ||||| ||||||| | || |||||||||||| |||||||||    
T  26092144 cctctgaagtgaactacgctgaaataacggtacttaggaaggtgacattatctaatattggtgtaaacctacc 26092072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 178
Target Start/End: Original strand, 21019130 - 21019272
Alignment:
Q  39 atttaatttaagttctttattcagttatttttcgaatcctatttaattttactat--tgtgtaagatttgtctcctctaaagcgaa-tcactctgagata 135  Q
    |||||||||||  |||||||||| ||||||||  ||||||||||||||||||| |  || ||||||||||||  ||||||||||||  ||| ||||||||    
T  21019130 atttaatttaaagtctttattcatttatttttttaatcctatttaattttactttcgtgcgtaagatttgtccactctaaagcgaacccaccctgagata 21019229  T
Q  136 acggtgcttagaaaggtgaaatacctaatattggtgcaaacct 178  Q
    ||    ||||| ||||||| | |||||||||||||||||||||    
T  21019230 acaacacttaggaaggtgacacacctaatattggtgcaaacct 21019272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 173
Target Start/End: Original strand, 23055369 - 23055505
Alignment:
Q  39 atttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgt--gtaagatttgtctcctctaaagcgaatcactctgagataa 136  Q
    ||||||||||| || |||||||| |||||||||||||  |||||||||||||| | ||   ||||||||||||||| | |||| || |||  ||| ||||    
T  23055369 atttaatttaaattttttattcatttatttttcgaatattatttaattttactgtcgtacataagatttgtctcctttgaagcaaaccaccttgaaataa 23055468  T
Q  137 cggtgcttagaaaggtgaaatacctaatattggtgca 173  Q
    || | || |||||||||| ||||||||||||||||||    
T  23055469 cgctactaagaaaggtgacatacctaatattggtgca 23055505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 18473748 - 18473833
Alignment:
Q  14 gaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaa 100  Q
    ||||||||| ||| ||| ||||||| |||||||||||| ||||||||| ||||||||  ||| ||||||||||||||||||| ||||    
T  18473748 gaaccactattttgtttattggatattttaatttaagt-ctttattcaattatttttgaaattctatttaattttactattgcgtaa 18473833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 20339029 - 20339104
Alignment:
Q  14 gaaccactaatttatttgttggata-atttaatttaagttctttattcagttatttttcgaatcctatttaatttta 89  Q
    ||||| ||| ||||||||||||||  ||||| ||||||| ||||||||| |||||||  ||||||||||||||||||    
T  20339029 gaacctctattttatttgttggatttatttattttaagt-ctttattcaattattttatgaatcctatttaatttta 20339104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 11533323 - 11533275
Alignment:
Q  133 ataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacc 181  Q
    |||||||| ||||| ||||||| | |||||||||||||| |||||||||    
T  11533323 ataacggtacttaggaaggtgacaaacctaatattggtgaaaacctacc 11533275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 44 - 181
Target Start/End: Original strand, 19547839 - 19547976
Alignment:
Q  44 atttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatcactctgagataacggtgct 143  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| ||||| ||| ||| ||    
T  19547839 atttaagttctttattcaattattttttgaatcctatttaattttactattgcgtaagctttgtctcctctaaagagaatcaccctgaggtaagggtact 19547938  T
Q  144 tagaaaggtgaaatacctaatattggtgcaaacctacc 181  Q
    ||| ||||| | ||||||| |||||||| |||||||||    
T  19547939 taggaaggtaacatacctattattggtgaaaacctacc 19547976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 20316914 - 20317088
Alignment:
Q  8 tgagatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaaga-tttg 106  Q
    ||||||||||  ||| ||| |||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||| | |||||| ||||    
T  20316914 tgagatgaacgtctattttgtttgttggattatttaatttaagttctttattcagttattttgtgaatcctatttaattttactatagcgtaagattttg 20317013  T
Q  107 tctcctctaaagcgaatcactctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacc 181  Q
    | || ||||||| ||| ||| |||||||||| || ||| | ||||||| ||| |||||||| ||| |||||||||    
T  20317014 tttcttctaaagtgaaccaccctgagataacagtacttgggaaggtgacatagctaatattagtgaaaacctacc 20317088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 22217746 - 22217890
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaaga-tttgtc 108  Q
    ||||||||  ||| |||| ||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||| |||||     
T  22217746 agatgaacatctattttacttgttggattatttaatttaagttctttattcagttattttctgaatcctatttaattttactattgcgtaagactttgtt 22217845  T
Q  109 tcctctaaagcgaatcactctgagataacggtgcttagaaaggtg 153  Q
    |  | | ||||||| ||| ||||||||||||| ||||| ||||||    
T  22217846 ttttatgaagcgaaccaccctgagataacggtacttaggaaggtg 22217890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 23975158 - 23975060
Alignment:
Q  26 tatttgttggata---atttaatttaagttctttattcagttatttttcgaatcctatttaattttac--tattgtgtaagatttgtctcctctaaagc 119  Q
    |||||||||||||   |||||||||||  |||||||| |||||||| |||| | ||||||||||||||  || ||||| | ||||||||||||||||||    
T  23975158 tatttgttggatatttatttaatttaaagtctttatttagttatttctcgattgctatttaattttactgtagtgtgttatatttgtctcctctaaagc 23975060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 19901459 - 19901395
Alignment:
Q  52 tctttattcagttatttttcgaatcctatttaattttactat--tgtgtaagatttgtctcctct 114  Q
    |||||||||| ||||||||| ||||||||||||||||||| |  ||| |||||||||||| ||||    
T  19901459 tctttattcatttatttttctaatcctatttaattttactgtcgtgtataagatttgtcttctct 19901395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 15049280 - 15049353
Alignment:
Q  10 agatgaaccactaatttatttgttggata----atttaatttaagttctttattcagttatttttcgaatccta 79  Q
    ||||||||| ||| ||| |||||||||||    ||||||||||| |||||||||||||||||||  ||||||||    
T  15049280 agatgaacctctattttgtttgttggatattttatttaatttaaattctttattcagttattttgtgaatccta 15049353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 15105144 - 15105071
Alignment:
Q  10 agatgaaccactaatttatttgttggata----atttaatttaagttctttattcagttatttttcgaatccta 79  Q
    ||||||||| ||| ||| |||||||||||    ||||||||||| |||||||||||||||||||  ||||||||    
T  15105144 agatgaacctctattttgtttgttggatattttatttaatttaaattctttattcagttattttgtgaatccta 15105071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 4214654 - 4214714
Alignment:
Q  12 atgaaccactaatttatttgttggata---atttaatttaagttctttattcagttatttt 69  Q
    ||||||| ||| |||||||||||||||   |||||||||||  ||||||||||||||||||    
T  4214654 atgaacctctattttatttgttggatatttatttaatttaaagtctttattcagttatttt 4214714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 184
Target Start/End: Complemental strand, 9387004 - 9386829
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgt-aagatttgtc 108  Q
    ||||||||| ||| ||| |||||||||| ||||||||||||||||||||| ||||||| || |||||||||||||||||||||||| || ||||||| ||    
T  9387004 agatgaacctctattttgtttgttggattatttaatttaagttctttatttagttattatttgaatcctatttaattttactattgcgtaaagatttatc 9386905  T
Q  109 tcctctaaagcgaatcactctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacctaa 184  Q
    |||||| ||||||| | |  |||||||||| | ||||  ||||| | ||||||||| |||||||||||| ||||||    
T  9386904 tcctctgaagcgaaccgccttgagataacgatacttaagaaggttacatacctaattttggtgcaaacccacctaa 9386829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 175
Target Start/End: Complemental strand, 16167129 - 16166982
Alignment:
Q  28 tttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatcact 127  Q
    ||||||| || ||||||||||||||  ||||||| |||||||| ||||||||||||||||||||| ||  ||||||||||| |||||||||| || |||     
T  16167129 tttgttgaattatttaatttaagttgcttattcaattattttttgaatcctatttaattttactagtgcataagatttgtcacctctaaagcaaaccacc 16167030  T
Q  128 ctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaa 175  Q
    || ||||||| || ||||| || |||| ||||| ||||||||||||||    
T  16167029 ctaagataacagtacttaggaatgtgacatacccaatattggtgcaaa 16166982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 171
Target Start/End: Complemental strand, 32759387 - 32759223
Alignment:
Q  10 agatgaaccactaatttatttgttggata----atttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgt--gtaagat 103  Q
    ||||||||| ||| | |||||||||||||    |||||||||||  |||||||| |||||||||| ||||||||||| |||||||||||||  ||| ||     
T  32759387 agatgaacctctattctatttgttggatattttatttaatttaaagtctttatttagttattttttgaatcctatttgattttactattgtgcgtatga- 32759289  T
Q  104 ttgtctcctctaaagcgaatcactctgagataacggtgcttagaaaggtgaaatacctaatattggtg 171  Q
    ||||||| ||| ||||  || || ||||||||  ||| |||||  |||||| ||||||||||||||||    
T  32759288 ttgtctcatctgaagc--ataaccctgagatataggtacttagggaggtgacatacctaatattggtg 32759223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 10504495 - 10504413
Alignment:
Q  39 atttaatttaagttctttattcagttatttttcgaatcctatttaattttactat--tgtgtaagatttgtctcctctaaagc 119  Q
    |||||||||||  ||||||||||||| |||||| ||||| |||||||||||||||  || |||||||||||||||||| ||||    
T  10504495 atttaatttaaagtctttattcagttgtttttctaatccaatttaattttactatcgtgcgtaagatttgtctcctctgaagc 10504413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 3357477 - 3357395
Alignment:
Q  39 atttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgt--gtaagatttgtctcctctaaagc 119  Q
    |||||||||||  |||||||||| |||||||    || ||||||||||||||||||||  ||||||| |||||||||| ||||    
T  3357477 atttaatttaaagtctttattcacttattttgattatgctatttaattttactattgtgggtaagatctgtctcctctgaagc 3357395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 18923060 - 18922889
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtct 109  Q
    ||||||||| ||| ||||||||||  || |||||||||||||| ||||||||||||||||  |||||||||||||||||||||    ||| |||||||||    
T  18923060 agatgaacctctattttatttgttaaattatttaatttaagttttttattcagttattttatgaatcctatttaattttactacaacgtaggatttgtct 18922961  T
Q  110 cctctaaagcgaatcactctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacc 181  Q
     |||| |||| || ||| ||| |||||| || ||||| ||||||  ||||||||||||||||||||||||||    
T  18922960 tctctgaagcaaagcaccctgcgataacagtacttaggaaggtggcatacctaatattggtgcaaacctacc 18922889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 28 - 166
Target Start/End: Complemental strand, 34368680 - 34368543
Alignment:
Q  28 tttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatcact 127  Q
    |||| ||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||| | ||||| |||     
T  34368680 tttgctggattatttaatttaaattctttattcagttatttt-cgaatcctatttaattttactattgcgtaagatttgtcttctctgacgcgaaccacc 34368582  T
Q  128 ctgagataacggtgcttagaaaggtgaaatacctaatat 166  Q
     | |||||| ||| ||||| || |||| |||||||||||    
T  34368581 ttaagataaaggtacttaggaaagtgacatacctaatat 34368543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 27870631 - 27870530
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtct 109  Q
    ||||||||| ||| ||  |||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||    
T  27870631 agatgaacctctatttattttgttggatgatttaatttaagt-ctttattcagttatttctcgaatcctatttaattttactattgcataagatttgtct 27870533  T
Q  110 cct 112  Q
    |||    
T  27870532 cct 27870530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 18933166 - 18932996
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtct 109  Q
    ||||||||| ||| ||| ||||||||||  |||||||||||||||||| | || ||||||  ||||||||||||| |||| ||| | |||||||||||||    
T  18933166 agatgaacctctattttgtttgttggattgtttaatttaagttctttactaagatattttatgaatcctatttaactttattatagcgtaagatttgtct 18933067  T
Q  110 cctctaaagcgaatcactctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctac 180  Q
    ||||  ||| ||| ||| ||||||||||  | ||||| ||||||| |||  ||||||||||| ||| ||||    
T  18933066 cctcagaagtgaaccaccctgagataacaatacttaggaaggtgacatatataatattggtgaaaatctac 18932996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 25937940 - 25937861
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaatttta 89  Q
    ||||||||| ||| |||||||||||||| ||||||||||||||||||||| || || |||  ||||||||||||||||||    
T  25937940 agatgaacctctattttatttgttggattatttaatttaagttctttatttagatactttatgaatcctatttaatttta 25937861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 8502231 - 8502345
Alignment:
Q  10 agatgaaccactaatttatttgttggata---atttaatttaagttctttattcagttatttttcgaatcctatttaattttactat--tgtgtaagatt 104  Q
    ||||||||| ||| | |||||||||||||   |||||||||||  ||||||||||||||||| | ||||  ||||||||||||||||  || ||||||||    
T  8502231 agatgaacctctattctatttgttggatatttatttaatttaaagtctttattcagttatttcttgaattttatttaattttactatagtgcgtaagatt 8502330  T
Q  105 tgtctcctctaaagc 119  Q
    |||||||||| ||||    
T  8502331 tgtctcctctgaagc 8502345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 30682970 - 30683063
Alignment:
Q  28 tttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaat 123  Q
    |||||||||| |||||||| || |||||||||||||| |||||  ||||||||| |||||| |||||  ||||||||||||||||||  |||||||    
T  30682970 tttgttggattatttaattcaaattctttattcagtttttttt--aatcctattgaattttcctattacgtaagatttgtctcctctggagcgaat 30683063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 8446268 - 8446327
Alignment:
Q  10 agatgaaccactaatttatttgttggata-atttaatttaagttctttattcagttattt 68  Q
    ||||||||| ||| ||||||||||||||  ||||||||||||||||||||||||||||||    
T  8446268 agatgaacctctattttatttgttggatctatttaatttaagttctttattcagttattt 8446327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 12556886 - 12556937
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattca 61  Q
    ||||||||  ||| |||||||||||||| |||||||||||||||||||||||    
T  12556886 agatgaacttctattttatttgttggattatttaatttaagttctttattca 12556937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 26009004 - 26008832
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtct 109  Q
    |||||||||  || |||||||||||||  ||||||||||||||| | ||||| |||||||| |||| ||||| ||||||| ||| | ||||||||||| |    
T  26009004 agatgaacctttattttatttgttggagtatttaatttaagttcctaattcatttattttttgaatactattaaattttattatagcgtaagatttgttt 26008905  T
Q  110 cctctaaagcgaatc-actctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacc 181  Q
    | ||| | ||||||| || ||||||||||||| ||||| ||||||  || |||||||||||| ||||||||||    
T  26008904 cttcttatgcgaatcaaccctgagataacggtacttaggaaggtggcatccctaatattggtacaaacctacc 26008832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 18829492 - 18829423
Alignment:
Q  24 tttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactat 93  Q
    |||||||||||||| ||||||||||| |  |||||||| |||||||  ||||||||||||||||| ||||    
T  18829492 tttatttgttggattatttaatttaaatgatttattcatttattttaggaatcctatttaatttttctat 18829423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 24115032 - 24115116
Alignment:
Q  56 tattcagttatttttcgaatcctatttaattttactat--tgtgtaagatttgtctcctctaaagcgaatcactctgagataacg 138  Q
    ||||||||||||| ||||||||||||||| |||||| |  || ||||||||| |||||||  ||||||| ||| |||||||||||    
T  24115032 tattcagttatttatcgaatcctatttaaatttactgtcgtgcgtaagatttctctcctcataagcgaaccaccctgagataacg 24115116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 24080442 - 24080388
Alignment:
Q  37 taatttaatttaagttctttattcagttatttttcgaatcctatttaattttact 91  Q
    |||||||||||||  | |||| |||||||||||||| ||||||||||||||||||    
T  24080442 taatttaatttaaagtatttagtcagttatttttcgtatcctatttaattttact 24080388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 45264870 - 45264923
Alignment:
Q  129 tgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacct 182  Q
    |||||||||||| ||||  || |||| |||||||||||||||| ||||||||||    
T  45264870 tgagataacggtacttaagaaagtgacatacctaatattggtgaaaacctacct 45264923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 45264780 - 45264828
Alignment:
Q  39 atttaatttaagttctttattcagttatttttcgaatcctatttaattt 87  Q
    ||||||||||||||||||||||| ||| |||  ||||| ||||||||||    
T  45264780 atttaatttaagttctttattcaattactttatgaatcatatttaattt 45264828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 25934218 - 25934373
Alignment:
Q  26 tatttgttggataatttaatttaagttctttattcagttatttt-tcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaatc 124  Q
    |||||||| ||| |||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| ||  |||||||||| |||||| ||||||| |    
T  25934218 tatttgtttgattatttaatttaagttatttatccagttattttgtcgaatcctatttaattttactactgcataagatttgtatcctctgaagcgaacc 25934317  T
Q  125 actctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctac 180  Q
    |  |||||||| || | || || ||||| | |||| |||||||| || ||||||||    
T  25934318 agcctgagatatcgatactgaggaaggttacatacataatattgatgaaaacctac 25934373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 17831040 - 17830869
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttc-gaatcctatttaattttactattgtg--taagatttg 106  Q
    ||||||||| ||| |||  |||||||||| ||||||||||  ||| |||||| || |||||  |||||||||||||||||||||| |||  ||||| |||    
T  17831040 agatgaacctctattttgattgttggatattttaatttaaaatctgtattcaattttttttttgaatcctatttaattttactatcgtgcgtaagagttg 17830941  T
Q  107 tctcctctaaagcgaatcactctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacct 178  Q
    |||||| | ||||||| ||| |||||||||||||  || | ||||||| |||||||||||| ||||| ||||    
T  17830940 tctccttttaagcgaaccaccctgagataacggtaattcggaaggtgacatacctaatattagtgcatacct 17830869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 182
Target Start/End: Complemental strand, 28279377 - 28279218
Alignment:
Q  24 tttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaagatttgtctcctctaaagcgaat 123  Q
    |||||||||||||| ||||||||||| || ||||||||||||||||  |  | ||||||||||||| || || ||||||||||| || ||| ||||||||    
T  28279377 tttatttgttggattatttaatttaaattatttattcagttattttatgtttactatttaattttattactgcgtaagatttgtttcttctgaagcgaat 28279278  T
Q  124 cactct-gagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacct 182  Q
     | | | ||||||||  | ||||| || |||| ||| |||||||||||||||||||||||    
T  28279277 taatatggagataacaatacttaggaacgtgacatatctaatattggtgcaaacctacct 28279218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 13692950 - 13692872
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaatttt 88  Q
    ||||||||| ||| ||| || ||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  13692950 agatgaacctctattttgttcgttggattatttaatttaagttctttattcagttattttttgaatcctattaaatttt 13692872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 20533240 - 20533413
Alignment:
Q  10 agatgaaccactaatttatttgttggataattt-aatttaagttctttattcagttatttttcgaatcctatttaattttactattgtgtaaga-tttgt 107  Q
    ||||||| | ||| |||||||||||||| |||| |||||||||  |||||||| ||||||| ||||||||||||||||||||||| | ||||||  |||     
T  20533240 agatgaatctctattttatttgttggattattttaatttaagtcttttattcatttattttacgaatcctatttaattttactatagcgtaagacattgc 20533339  T
Q  108 ctcctctaaagcgaatca-ctctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacctac 180  Q
     || ||| ||| ||| || | ||| ||||||||| ||||  ||||||| |||| ||||||||||| ||||||||    
T  20533340 ttcttctgaagtgaaccagccctgcgataacggtacttacgaaggtgacatacttaatattggtgtaaacctac 20533413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 171
Target Start/End: Original strand, 111811 - 111945
Alignment:
Q  39 atttaatttaagttctttattcagttatttttcgaatcctatttaattttactat--tgtgtaagatttgtctcctctaaagcgaatcactctgagataa 136  Q
    |||||| ||||  |||||||||||||||||| ||||||||||||||||||||| |  || ||||| ||||||||| ||| |||||| |||  |||||||     
T  111811 atttaacttaaagtctttattcagttattttccgaatcctatttaattttactgtcatgcgtaaggtttgtctcccctagagcgaaccaccatgagatat 111910  T
Q  137 cggtgcttagaaaggtgaaatacctaatattggtg 171  Q
     | | |||||  |||||| ||| ||||||||||||    
T  111911 agctacttagggaggtgacataactaatattggtg 111945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 181
Target Start/End: Complemental strand, 22920277 - 22920131
Alignment:
Q  37 taatttaatttaagttctttattcagttatttttcgaatcctatttaattttact--attgtgtaagatttgtctcctctaaagcgaatcactctgagat 134  Q
    |||||||||||||  |||||||||||||||||||  ||||||||||||| || ||    || |||||||||||||||||| |||| || |||  ||||||    
T  22920277 taatttaatttaaactctttattcagttatttttttaatcctatttaatcttgctgccgtgcgtaagatttgtctcctctgaagcaaaccaccttgagat 22920178  T
Q  135 aacggtgcttagaaaggtgaaatacctaatattggtgcaaacctacc 181  Q
    || |||  | || ||||||| || |||| |||| ||||| |||||||    
T  22920177 aaaggtaataaggaaggtgacatgcctagtattagtgcatacctacc 22920131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 26308505 - 26308371
Alignment:
Q  39 atttaatttaagttctttattcagttatttttcgaatcctatttaattttactattgtg--taagatttgtctcctctaaagcgaatcactctgagataa 136  Q
    |||||||||||  | |||||| |||||| ||| |||||||||||||||||| | | |||  |||||||||||| |||| |||||||| ||  ||||||||    
T  26308505 atttaatttaaagtttttattaagttatattttgaatcctatttaattttattgtcgtgcgtaagatttgtcttctctgaagcgaataacattgagataa 26308406  T
Q  137 cggtgcttagaaaggtgaaatacctaatattggtg 171  Q
     | | |||||  |||||| ||| ||||||||||||    
T  26308405 agttacttagggaggtgacatatctaatattggtg 26308371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 32582897 - 32582833
Alignment:
Q  29 ttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttactat 93  Q
    |||||| ||| |||||||||||||||||||| || ||||||  ||||||||||||| ||||||||    
T  32582897 ttgttgaatattttaatttaagttctttatttagatattttgtgaatcctatttaactttactat 32582833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 25921993 - 25922057
Alignment:
Q  26 tatttgttggataattt-aatttaagttctttattcagttatttttcgaatcctatttaatttta 89  Q
    |||||||||||| |||| |||||||||| ||||||| ||||||||  |||| |||||||||||||    
T  25921993 tatttgttggattattttaatttaagttttttattctgttattttatgaattctatttaatttta 25922057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 15544830 - 15544789
Alignment:
Q  143 ttagaaaggtgaaatacctaatattggtgcaaacctacctaa 184  Q
    |||| ||||||| ||| |||||||||||||||||||||||||    
T  15544830 ttaggaaggtgacatatctaatattggtgcaaacctacctaa 15544789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 17337010 - 17337086
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaatttta 89  Q
    |||| |||| ||| ||||| | |||||| |||||||||||||||||||||||   |||||  ||||||| ||||||||||    
T  17337010 agataaacctctattttatgttttggattatttaatttaagttctttattca---attttatgaatcctttttaatttta 17337086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 22871682 - 22871619
Alignment:
Q  10 agatgaaccactaatttatttgttggata---atttaattta-agttctttattcagttatttt 69  Q
    ||||||||| ||| |||||||||||||||   |||||||||| |||| ||||||||||||||||    
T  22871682 agatgaacctctattttatttgttggataattatttaatttatagttgtttattcagttatttt 22871619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 13602 - 13683
Alignment:
Q  10 agatgaaccactaatttatttgttggataatttaatttaagttctttattcagttatttttcgaatcctatttaattttact 91  Q
    ||||||||| ||| ||||||||||||||| ||||||||||  ||| ||||||||||||| | ||||| ||||||||||||||    
T  13602 agatgaacctctattttatttgttggatattttaatttaaagtctctattcagttatttattgaatcttatttaattttact 13683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 10828 - 11002
Alignment:
Q  10 agatgaaccactaatttatttgttggata----atttaatttaagttctttattcagttatttttcgaatcctatttaattttactat--tgtgtaagat 103  Q
    ||||||||| ||| ||| |||||||||||    ||||||||||| |||||||||||||||||||  |||||| |  ||||||||||||  || |||||||    
T  10828 agatgaacctctattttgtttgttggatatttaatttaatttaaattctttattcagttattttgtgaatcc-aaataattttactatcgtgcgtaagat 10926  T
Q  104 ttgtctcctctaaagcg-aatcactctgagataacggtgcttagaaaggtgaaatacctaatattggtgcaaacct 178  Q
    ||||| | ||| ||| | || |||  |||||||||| | || || ||||||| |||| ||||||||||||| ||||    
T  10927 ttgtcgcatctgaagtgaaaccaccatgagataacgatactcaggaaggtgacatacataatattggtgcatacct 11002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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