View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9721_low_1 (Length: 385)
Name: NF9721_low_1
Description: NF9721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9721_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 250619 - 250283
Alignment:
| Q |
1 |
tgataatgatagaaatagttaaaaccagttgatacaaactctgttttcgacgacaactactaataatcatgcctcaaggataatcagttattaacatgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
250619 |
tgataatgatagaaatagttaaaaccagttgatacaaactctgttttcgacgaaaactactaataatcatgcctcaaggataatcagttattaacatgaa |
250520 |
T |
|
| Q |
101 |
ttcttccgagaattgaaggttgaaccctcaagaataccttatgatttatctgtattttttaacccggttatgcttaagttgaacgttgttaatggtacaa |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
250519 |
ttcttccgagaattaaaggttgaaccctcaagaataccttatgatttatctgtattttttaacccggttatgctttagttgaacgttgttaatggtacaa |
250420 |
T |
|
| Q |
201 |
taaaaggctgtgcatactgatacctttgcaagaaatattgatatctttcgcagaattccgattttagaataaatggtgtgcaagcaaactgatcttagcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
250419 |
taaaaggctgtgcatactgatacctttgcaagaaatattgatatctttcgcagaattccgattttagaataaatggtgtgcaagcaaactgatcttagcc |
250320 |
T |
|
| Q |
301 |
aagagagcacctaaagtgcaatgctttaatgaataaa |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
250319 |
aagagagcacctaaagtgcaatgctttaatgaataaa |
250283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 364
Target Start/End: Complemental strand, 10118944 - 10118911
Alignment:
| Q |
331 |
gaataaactaggtgtataacccgtgcgttgcacg |
364 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
10118944 |
gaataaactaggtatataacccgtgcgttgcacg |
10118911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 334 - 368
Target Start/End: Complemental strand, 35873565 - 35873531
Alignment:
| Q |
334 |
taaactaggtgtataacccgtgcgttgcacgggtt |
368 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
35873565 |
taaactaggtatataacccgtgcgttgcacgggtt |
35873531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 368
Target Start/End: Complemental strand, 4141366 - 4141333
Alignment:
| Q |
335 |
aaactaggtgtataacccgtgcgttgcacgggtt |
368 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
4141366 |
aaactaggtatataacccgtgcgttgcacgggtt |
4141333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 368
Target Start/End: Original strand, 21560320 - 21560353
Alignment:
| Q |
335 |
aaactaggtgtataacccgtgcgttgcacgggtt |
368 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
21560320 |
aaactaggtatataacccgtgcgttgcacgggtt |
21560353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 368
Target Start/End: Complemental strand, 13789513 - 13789481
Alignment:
| Q |
336 |
aactaggtgtataacccgtgcgttgcacgggtt |
368 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
13789513 |
aactaggtatataacccgtgcgttgcacgggtt |
13789481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University