View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9721_low_10 (Length: 265)
Name: NF9721_low_10
Description: NF9721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9721_low_10 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 40383045 - 40383213
Alignment:
| Q |
9 |
gtagcatagggagtatcgtctgtttatggtttaataattcaagttatcactaatataggaagcatctttgttatttagcataagaagtatcgttttatgt |
108 |
Q |
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| T |
40383045 |
gtagcatagggagtatcatctgtttatagtttaataattcaagttatcactaacataggaagcatcttt-ttatttagcataagaagtatcgttttatgt |
40383143 |
T |
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| Q |
109 |
accttttgtgtataactattattaatttannnnnnngaatatataaatgtatcaaatactctctccgtct |
178 |
Q |
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| T |
40383144 |
accttttgtgtataactattattaatttatttttttgaatatataaatgtatcaaatactctctccgtct |
40383213 |
T |
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Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 28110915 - 28111001
Alignment:
| Q |
179 |
ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgccca |
265 |
Q |
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| T |
28110915 |
ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgccca |
28111001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 24837334 - 24837248
Alignment:
| Q |
179 |
ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgccca |
265 |
Q |
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| T |
24837334 |
ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgccca |
24837248 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 30871518 - 30871450
Alignment:
| Q |
197 |
agcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgccca |
265 |
Q |
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| T |
30871518 |
agcaacgaggctgtcatatattccctgtcaaaacagcaaaacagcagcatacaacagcctcaccgccca |
30871450 |
T |
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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 4028634 - 4028558
Alignment:
| Q |
179 |
ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcc |
255 |
Q |
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| T |
4028634 |
ggtgcaaagaagcaggacagcagtgaggccgtcatatactcctagccaaaaaagcagaacagcagcataccaaagcc |
4028558 |
T |
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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 34326558 - 34326482
Alignment:
| Q |
179 |
ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcc |
255 |
Q |
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| T |
34326558 |
ggtgcaaagaagcaggacagcagcgaggctgtcatatactcctagccgaaaaatcagaacagcagcataccaaagcc |
34326482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 35052330 - 35052375
Alignment:
| Q |
189 |
agcaggacagcaatgaggctgtcatatactcctagccaaaacagca |
234 |
Q |
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| T |
35052330 |
agcaggacaacaatgaggctgtcatatactcgtagccaaaacagca |
35052375 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 22793016 - 22793064
Alignment:
| Q |
38 |
tttaataattcaagttatcactaatataggaagcatctttgttatttagca |
88 |
Q |
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| T |
22793016 |
tttaataattcaagttttca--aacataggaagcatctttgttatttagca |
22793064 |
T |
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