View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9721_low_17 (Length: 225)
Name: NF9721_low_17
Description: NF9721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9721_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 19890175 - 19890372
Alignment:
| Q |
13 |
tttggtgttgttttcctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacggaagtgaaagcttt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
19890175 |
tttggtgttgttttcctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacagaagtgaaaaattt |
19890274 |
T |
|
| Q |
113 |
tgatgattcaaaagctggtgtcagaggtttggtggagcatggggtgtcaaagatcccgcgcatttttcatactggtaagttggacatcggtgaaaact |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
19890275 |
tgatgattcaaaagctggtgtcagaggtttggtggagcatggggtgtcaaagatcccgcgcatttttcataccggtaagttggatatcggtgaaaact |
19890372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 19844322 - 19844454
Alignment:
| Q |
15 |
tggtgttgttttcctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacggaagtgaaagcttttg |
114 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||| || |||| |||| ||||||||||||||||||||| | | |||||||||||||||| |
|
|
| T |
19844322 |
tggtgttgttt--ctctcaatatggtggtaaaaaactcaaaccaagtagaaaaatccactaattccacttatgatagatacaatgaagtgaaagcttttg |
19844419 |
T |
|
| Q |
115 |
atgattcaaaagctggtgtcagaggtttggtggag |
149 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19844420 |
atgattcaaaagctggtgtgagaggtttggtggag |
19844454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 29462565 - 29462725
Alignment:
| Q |
15 |
tggtgttgttttcctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacggaagtgaaagcttttg |
114 |
Q |
| |
|
||||||||||| ||| |||||||||||||| ||||| |||| || ||| ||||||| | | ||| ||||||||||||| || | ||||| |||||||||| |
|
|
| T |
29462565 |
tggtgttgtttgcctatcaatatggtggtagaaaactcaaaccaattaaaggaatccagtgatttcacttatgatagagaagccgaagttaaagcttttg |
29462664 |
T |
|
| Q |
115 |
atgattcaaaagctggtgtcagaggtttggtggagcatggggtgtcaaagatcccgcgcat |
175 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||| ||||||||||||||| || ||||| |
|
|
| T |
29462665 |
atgattcaaaagttggtgtcaaaggtttggtggattctggggtgtcaaagattccacgcat |
29462725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 49465616 - 49465421
Alignment:
| Q |
15 |
tggtgttgttttcctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacggaagtgaaagcttttg |
114 |
Q |
| |
|
|||| |||||| | |||||| ||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
49465616 |
tggttttgtttccttctcaacatggtggtaaaaaacacaaatcaattagaggaagccactgattccacttatgatagaaaagctgaagtgaaagcttttg |
49465517 |
T |
|
| Q |
115 |
atgattcaaaagctggtgtcagaggtttggtggagcatggggtgtcaaagatcccgcgcatttttcatactggtaagttggacatcggtgaaaact |
210 |
Q |
| |
|
|||||||| ||| || |||| |||||||| ||| |||||| ||||||||||| ||| |||| ||| | || |||||||||||||||||||||| |
|
|
| T |
49465516 |
atgattcacgagcaggcgtcaatggtttggttgagtctggggtttcaaagatcccacgctttttccatgccgggaagttggacatcggtgaaaact |
49465421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 8348970 - 8349069
Alignment:
| Q |
76 |
attccacttatgatagaaaaacggaagtgaaagcttttgatgattcaaaagctggtgtcagaggtttggtggagcatggggtgtcaaagatcccgcgcat |
175 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||||||||||||||||||| |||||| |||||| | |||||| |||||| |||||||||| ||||| |
|
|
| T |
8348970 |
attccacatatgatagaaatgctgaagtgaaagcttttgatgattcaaaacttggtgttagaggtcttatggagcgtggggtaacaaagatcccacgcat |
8349069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 1092841 - 1093010
Alignment:
| Q |
27 |
cctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacggaagtgaaagcttttgatgattcaaaag |
126 |
Q |
| |
|
|||||||| |||||||| ||||||||||| || ||||||||| | ||||||||||||||||||||| || | |||||||||||||||||||||||||||| |
|
|
| T |
1092841 |
cctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaag |
1092940 |
T |
|
| Q |
127 |
ctggtgtcagaggtttggtggagcatggggtgtcaaagatcccgcgcatttttcatactggtaagttgga |
196 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| || || || ||||| || |||||||| ||| |||| |
|
|
| T |
1092941 |
taggtgtcaaaggtttggtggagtctggggtgtcgaaaattccacgcatgttccatactgggaagatgga |
1093010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 25225169 - 25225070
Alignment:
| Q |
76 |
attccacttatgatagaaaaacggaagtgaaagcttttgatgattcaaaagctggtgtcagaggtttggtggagcatggggtgtcaaagatcccgcgcat |
175 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||| |||||| | |||||| ||||||| |||||||||||||||| |
|
|
| T |
25225169 |
attccacatatgatagaaatgttgaagtgaaagcttttgatgattcgaaacttggtgttagaggtcttatggagcgtggggtgacaaagatcccgcgcat |
25225070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 26168213 - 26168312
Alignment:
| Q |
76 |
attccacttatgatagaaaaacggaagtgaaagcttttgatgattcaaaagctggtgtcagaggtttggtggagcatggggtgtcaaagatcccgcgcat |
175 |
Q |
| |
|
||||||| ||||||||||| ||| |||||| |||||||||||||||| |||||| |||||| | |||||| ||||||| |||||||||| ||||| |
|
|
| T |
26168213 |
attccacatatgatagaaatgatgaattgaaagtttttgatgattcaaaacttggtgtaagaggtcttatggagcgtggggtgacaaagatcccacgcat |
26168312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 26395847 - 26395923
Alignment:
| Q |
99 |
gaagtgaaagcttttgatgattcaaaagctggtgtcagaggtttggtggagcatggggtgtcaaagatcccgcgcat |
175 |
Q |
| |
|
||||||||||||||||| || ||||||| |||||| |||||| | |||||| |||||| |||||||||| ||||| |
|
|
| T |
26395847 |
gaagtgaaagcttttgaagaatcaaaagttggtgtaagaggtcttgtggagagtggggtaacaaagatcccacgcat |
26395923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University