View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9721_low_19 (Length: 210)

Name: NF9721_low_19
Description: NF9721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9721_low_19
NF9721_low_19
[»] chr7 (4 HSPs)
chr7 (15-194)||(354407-354586)
chr7 (20-194)||(10580795-10580963)
chr7 (43-158)||(10575417-10575532)
chr7 (83-155)||(39954885-39954957)
[»] chr3 (7 HSPs)
chr3 (15-159)||(21584633-21584776)
chr3 (15-155)||(25085041-25085180)
chr3 (15-155)||(24923500-24923639)
chr3 (43-155)||(24497299-24497411)
chr3 (15-155)||(31825597-31825736)
chr3 (15-152)||(24919929-24920065)
chr3 (15-155)||(24982049-24982188)
[»] chr8 (1 HSPs)
chr8 (64-159)||(14261068-14261163)
[»] chr2 (1 HSPs)
chr2 (64-159)||(41027623-41027718)
[»] chr4 (2 HSPs)
chr4 (64-159)||(22898604-22898699)
chr4 (64-159)||(22950272-22950367)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 354407 - 354586
Alignment:
Q  15 ggtgttgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacact 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354407 ggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacact 354506  T
Q  115 gagcgtgcaaggaggaagactctgactgctatggatgttgtttatcagggaagaaccctctacagttttggtggatgaag 194  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354507 gagcatgcaaggaggaagactctgactgctatggatgttgtttatcagggaagaaccctctacagttttggtggatgaag 354586  T

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Target: chr7; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 10580795 - 10580963
Alignment:
Q  20 tgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcg 119  Q
    ||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||| |||||  |||||||||||||||||||||||     
T  10580795 tgtgaagaggatcagtggtttga-tctatgaggaaataagaggactgttgaagattttcttgcagaataagattcttgatgctgttacttacactgagc- 10580892  T
Q  120 tgcaaggaggaagactctgactgctatggatgttgtttatcagggaagaaccctctacagttttggtggatgaag 194  Q
        | |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  10580893 ----atgaggaagactctgactgctatggatgttgtttatcagggaagaaccctctatggttttggtggatgaag 10580963  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 10575417 - 10575532
Alignment:
Q  43 atctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactg 142  Q
    ||||||||||||| |||||| ||||||||||| |||||| ||||||  ||  | |||||||||||||||||||||| ||| |||||||| ||| ||||||    
T  10575417 atctatgaggaaacaagaggtgtgttgaagatcttcttggagaatgttataagagatgctgttacttacactgagcatgcgaggaggaaaactgtgactg 10575516  T
Q  143 ctatggatgttgttta 158  Q
    ||||||||||||||||    
T  10575517 ctatggatgttgttta 10575532  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 39954957 - 39954885
Alignment:
Q  83 agaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt 155  Q
    |||||| |||| |||||||||||||||||||||||| ||| |||||||| ||| | || || |||||||||||    
T  39954957 agaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgt 39954885  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 159
Target Start/End: Complemental strand, 21584776 - 21584633
Alignment:
Q  15 ggtgttgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacact 114  Q
    |||| ||| ||||| ||||||||||| | | |||||||||| |||||||||  | |||||||||||| |||||| |||| ||||||| ||||| ||||||    
T  21584776 ggtggtgttaagagaatcagtggtttgatt-tatgaggaaacaagaggagttcttaagattttcttggagaatgtgattcgtgatgcggttacgtacact 21584678  T
Q  115 gagcgtgcaaggaggaagactctgactgctatggatgttgtttat 159  Q
    |||| |||||||||||||||| |||||||||||||||||||||||    
T  21584677 gagcatgcaaggaggaagactgtgactgctatggatgttgtttat 21584633  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 25085041 - 25085180
Alignment:
Q  15 ggtgttgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacact 114  Q
    |||| ||||||||| ||||||||||| | | ||||| ||||  ||||| || |||||||| |||||| |||||| |||  ||||||| ||||| ||||||    
T  25085041 ggtggtgtgaagagaatcagtggtttga-tatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacact 25085139  T
Q  115 gagcgtgcaaggaggaagactctgactgctatggatgttgt 155  Q
    ||||  ||||||||||||||| |||| || |||||||||||    
T  25085140 gagcacgcaaggaggaagactgtgacagccatggatgttgt 25085180  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 24923639 - 24923500
Alignment:
Q  15 ggtgttgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacact 114  Q
    |||| ||| ||||| ||||||||||| | ||||||| ||||  ||||| || |||||||| |||||| ||||||  ||| |||||||||| || ||||||    
T  24923639 ggtggtgttaagagaatcagtggtttga-tctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgacatacact 24923541  T
Q  115 gagcgtgcaaggaggaagactctgactgctatggatgttgt 155  Q
    ||||  ||||||||||||||  |||| || |||||||||||    
T  24923540 gagcacgcaaggaggaagacagtgacagccatggatgttgt 24923500  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 155
Target Start/End: Complemental strand, 24497411 - 24497299
Alignment:
Q  43 atctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactg 142  Q
    |||||||| ||||  ||||| || |||||||| |||||| | |||| |||  ||||||| ||||| ||||||||||  ||||||||||||||| |||| |    
T  24497411 atctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacag 24497312  T
Q  143 ctatggatgttgt 155  Q
    | |||||||||||    
T  24497311 ccatggatgttgt 24497299  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 31825736 - 31825597
Alignment:
Q  15 ggtgttgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacact 114  Q
    |||| ||||||||||||||||||||| | ||||||| ||||  ||||| || |||||||| |||||| ||||||  ||  ||||||| || || ||||||    
T  31825736 ggtggtgtgaagaggatcagtggtttga-tctatgaagaaactagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacact 31825638  T
Q  115 gagcgtgcaaggaggaagactctgactgctatggatgttgt 155  Q
    ||||  || |||||||||||  | || || |||||||||||    
T  31825637 gagcacgctaggaggaagacagttaccgcgatggatgttgt 31825597  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 24920065 - 24919929
Alignment:
Q  15 ggtgttgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacact 114  Q
    |||| ||||||||| ||||| ||||| | ||||||| ||||  ||||| || |||||||| |||||  ||||||  ||| |||||||||| || ||||||    
T  24920065 ggtggtgtgaagagaatcagcggtttga-tctatgaagaaaccagaggtgtcttgaagatcttcttagagaatgtcattcgtgatgctgtgacatacact 24919967  T
Q  115 gagcgtgcaaggaggaagactctgactgctatggatgt 152  Q
    ||||  || |||||||||||  |||| || ||||||||    
T  24919966 gagcacgctaggaggaagacagtgacagccatggatgt 24919929  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 24982049 - 24982188
Alignment:
Q  15 ggtgttgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacact 114  Q
    |||| ||| ||||| ||||||||||| | | ||||| ||||  ||||| || |||||||| |||||| ||||||  ||  ||||||| ||||| ||||||    
T  24982049 ggtggtgttaagagaatcagtggtttga-tatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacact 24982147  T
Q  115 gagcgtgcaaggaggaagactctgactgctatggatgttgt 155  Q
    ||||  || |||||||||||| | || || |||||||||||    
T  24982148 gagcacgctaggaggaagactgttaccgccatggatgttgt 24982188  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 159
Target Start/End: Complemental strand, 14261163 - 14261068
Alignment:
Q  64 gtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat 159  Q
    |||||||||||||||||| |||||| |||  | ||||||||||| || ||||| | ||| |||||||||||  | |||||||||||||||||||||    
T  14261163 gtgttgaagattttcttggagaatgtgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttat 14261068  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 159
Target Start/End: Original strand, 41027623 - 41027718
Alignment:
Q  64 gtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat 159  Q
    ||||||||||| || ||| ||||||  ||| ||||||||||||||||||| ||||  || ||||| |||||| | |||||||||||||||||||||    
T  41027623 gtgttgaagatctttttggagaatgttattcgtgatgctgttacttacacagagcacgctaggagaaagactgttactgctatggatgttgtttat 41027718  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 159
Target Start/End: Original strand, 22898604 - 22898699
Alignment:
Q  64 gtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat 159  Q
    ||||||||||| || ||| |||||| |||| | |||||||| |||||||||||||  || || ||||||||  | |||||||||||||| ||||||    
T  22898604 gtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttat 22898699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 159
Target Start/End: Original strand, 22950272 - 22950367
Alignment:
Q  64 gtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat 159  Q
    ||||||||||| || ||| |||||| |||| | |||||||| |||||||||||||  || || ||||||||  | |||||||||||||| ||||||    
T  22950272 gtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttat 22950367  T

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