View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9721_low_2 (Length: 367)
Name: NF9721_low_2
Description: NF9721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9721_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 10607991 - 10608330
Alignment:
| Q |
18 |
gaaactgtttgataatagtcctaagtggaatgttgttgttttgacttgtttgatcgctgggtatgagcaactgaggttaccattttcaatgctttgattg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10607991 |
gaaactgtttgataatagtcctaagtggaatgttgttgttttgacttgtttgatcgctgggtatgagcaactgaggttaccattttcaatgctttgattg |
10608090 |
T |
|
| Q |
118 |
catttgctcgcagtcgagacattgatactgggagatacttttatggtcacatgacatctgattgtaatgacattcttgcaacttcaattcttgaaatgta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10608091 |
catttgctcgcagtcgagacattgatactgggagatacttttatggtcacatgacatctgattgtaatgacattcttgcaacttcaattcttgaaatgta |
10608190 |
T |
|
| Q |
218 |
tgcagaatgtggtagcctgaatattgcaagagacttgttcaacaaaatgccgaagagaaacattgttgctttgaactgtatgattaaggtatgtctcagt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10608191 |
tgcagaatgtggtagcctgaatattgcaagagacttgttcaacaaaatgccgaagagaaacattgctgctttgaactgtatgattaaggtatgtctcagt |
10608290 |
T |
|
| Q |
318 |
tgaaactgtaattaatcattcaacatttttggatcctttg |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10608291 |
tgaaactgtaattaatcattcaacatttttggatcctttg |
10608330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 188 - 288
Target Start/End: Original strand, 10606450 - 10606550
Alignment:
| Q |
188 |
cattcttgcaacttcaattcttgaaatgtatgcagaatgtggtagcctgaatattgcaagagacttgttcaacaaaatgccgaagagaaacattgttgct |
287 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
10606450 |
cattcttgcaactttcattcttgaaatgtatgcaaaatgtggtagcttgaatattgcaagagaccggttcaacaaaatgccgaagagaaacatttttgct |
10606549 |
T |
|
| Q |
288 |
t |
288 |
Q |
| |
|
| |
|
|
| T |
10606550 |
t |
10606550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 189 - 304
Target Start/End: Complemental strand, 9807796 - 9807681
Alignment:
| Q |
189 |
attcttgcaacttcaattcttgaaatgtatgcagaatgtggtagcctgaatattgcaagagacttgttcaacaaaatgccgaagagaaacattgttgctt |
288 |
Q |
| |
|
|||||||||||| | ||| ||||||||||||| |||||||| | ||||| |||| ||||| ||||| |||||||||||| ||||||| |||||||||| |
|
|
| T |
9807796 |
attcttgcaactgctattgttgaaatgtatgcgaaatgtggttggttgaatgttgcgagagagttgtttaacaaaatgccggagagaaatattgttgctt |
9807697 |
T |
|
| Q |
289 |
tgaactgtatgattaa |
304 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
9807696 |
ggaactgtatgattaa |
9807681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 10739131 - 10739054
Alignment:
| Q |
171 |
acatctgattgtaatgacattcttgcaacttcaattcttgaaatgtatgcagaatgtggtagcctgaatattgcaaga |
248 |
Q |
| |
|
|||||| || |||||| |||||||||||||| | ||||||||||||||||| |||| |||||| |||| ||||||||| |
|
|
| T |
10739131 |
acatctaatagtaatgtcattcttgcaactttacttcttgaaatgtatgcaaaatgcggtagcttgaaaattgcaaga |
10739054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 10761474 - 10761397
Alignment:
| Q |
171 |
acatctgattgtaatgacattcttgcaacttcaattcttgaaatgtatgcagaatgtggtagcctgaatattgcaaga |
248 |
Q |
| |
|
|||||| || |||||| |||||||||||||| ||||||||||||||||||| |||| |||||| |||| | ||||||| |
|
|
| T |
10761474 |
acatctaatagtaatgtcattcttgcaactttaattcttgaaatgtatgcaaaatgcggtagcttgaaaaatgcaaga |
10761397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 9808056 - 9808008
Alignment:
| Q |
23 |
tgtttgataatagtcctaagtggaatgttgttgttttgacttgtttgat |
71 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| || |||||||||||| |
|
|
| T |
9808056 |
tgtttgataaaattcctaagtggaatgttgttgcttggacttgtttgat |
9808008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University