View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9721_low_3 (Length: 346)

Name: NF9721_low_3
Description: NF9721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9721_low_3
NF9721_low_3
[»] chr6 (10 HSPs)
chr6 (180-328)||(5734631-5734779)
chr6 (180-332)||(12733723-12733875)
chr6 (188-332)||(21167823-21167967)
chr6 (180-332)||(24767814-24767966)
chr6 (180-333)||(18789269-18789422)
chr6 (180-332)||(15959204-15959356)
chr6 (180-300)||(18651624-18651744)
chr6 (180-319)||(14373381-14373520)
chr6 (180-300)||(32536525-32536645)
chr6 (17-49)||(33421907-33421939)
[»] chr5 (14 HSPs)
chr5 (180-334)||(25824607-25824761)
chr5 (180-328)||(31641359-31641507)
chr5 (180-328)||(28536065-28536213)
chr5 (180-328)||(35984181-35984328)
chr5 (180-334)||(23237979-23238133)
chr5 (180-334)||(12820339-12820493)
chr5 (180-332)||(27117551-27117703)
chr5 (180-334)||(12824795-12824949)
chr5 (180-334)||(8227622-8227776)
chr5 (180-334)||(30732704-30732858)
chr5 (180-334)||(42513316-42513470)
chr5 (180-312)||(3418401-3418533)
chr5 (180-332)||(19255513-19255665)
chr5 (180-332)||(42927729-42927881)
[»] chr1 (14 HSPs)
chr1 (180-334)||(26059487-26059641)
chr1 (180-332)||(6259415-6259567)
chr1 (180-332)||(12813594-12813746)
chr1 (180-334)||(11909495-11909649)
chr1 (180-334)||(51052076-51052230)
chr1 (180-332)||(4841997-4842154)
chr1 (180-334)||(35540645-35540799)
chr1 (187-332)||(13351912-13352057)
chr1 (180-334)||(6050198-6050352)
chr1 (242-334)||(24547518-24547610)
chr1 (186-292)||(47623461-47623567)
chr1 (53-104)||(13082179-13082230)
chr1 (17-49)||(44789035-44789067)
chr1 (17-49)||(46911440-46911472)
[»] chr7 (11 HSPs)
chr7 (180-334)||(235829-235983)
chr7 (180-319)||(47876594-47876733)
chr7 (187-328)||(17720246-17720387)
chr7 (180-334)||(29967571-29967725)
chr7 (180-334)||(11277642-11277797)
chr7 (190-333)||(37919141-37919284)
chr7 (180-334)||(31177695-31177849)
chr7 (207-334)||(38890137-38890264)
chr7 (180-334)||(4938518-4938672)
chr7 (17-49)||(16708308-16708340)
chr7 (17-49)||(17682544-17682576)
[»] chr8 (15 HSPs)
chr8 (180-328)||(9922203-9922351)
chr8 (180-333)||(32266161-32266314)
chr8 (180-332)||(13395986-13396138)
chr8 (180-332)||(41665759-41665911)
chr8 (180-334)||(32567655-32567808)
chr8 (180-334)||(7923982-7924136)
chr8 (180-332)||(171701-171853)
chr8 (180-334)||(8299399-8299553)
chr8 (180-334)||(20496680-20496834)
chr8 (183-305)||(5181294-5181416)
chr8 (19-55)||(7375664-7375700)
chr8 (227-319)||(34137400-34137492)
chr8 (17-49)||(29991559-29991591)
chr8 (17-49)||(34718263-34718295)
chr8 (12-55)||(41704318-41704362)
[»] chr3 (10 HSPs)
chr3 (180-332)||(40930918-40931070)
chr3 (180-334)||(34333205-34333359)
chr3 (180-334)||(7312373-7312527)
chr3 (180-334)||(2363873-2364027)
chr3 (180-334)||(10323961-10324115)
chr3 (180-334)||(19920619-19920773)
chr3 (249-334)||(10312974-10313059)
chr3 (249-334)||(15827307-15827392)
chr3 (270-334)||(926717-926781)
chr3 (17-49)||(31376657-31376689)
[»] chr4 (19 HSPs)
chr4 (180-334)||(47686285-47686439)
chr4 (187-335)||(19754858-19755006)
chr4 (187-335)||(19784800-19784948)
chr4 (199-332)||(15739819-15739952)
chr4 (188-334)||(160089-160235)
chr4 (180-334)||(23642981-23643135)
chr4 (182-332)||(7403510-7403661)
chr4 (180-319)||(13271281-13271420)
chr4 (180-334)||(47418401-47418555)
chr4 (180-271)||(20788669-20788760)
chr4 (180-327)||(17402076-17402223)
chr4 (255-334)||(8890619-8890698)
chr4 (249-334)||(16427145-16427230)
chr4 (180-319)||(23163022-23163160)
chr4 (268-334)||(43019537-43019603)
chr4 (217-305)||(11587625-11587713)
chr4 (17-49)||(13263289-13263321)
chr4 (17-49)||(18624111-18624143)
chr4 (17-49)||(51887810-51887842)
[»] scaffold0369 (1 HSPs)
scaffold0369 (188-332)||(11603-11747)
[»] scaffold0511 (1 HSPs)
scaffold0511 (180-333)||(5802-5955)
[»] scaffold0034 (1 HSPs)
scaffold0034 (180-334)||(106233-106387)
[»] chr2 (7 HSPs)
chr2 (180-298)||(4551801-4551919)
chr2 (180-305)||(41206631-41206756)
chr2 (180-332)||(15917251-15917403)
chr2 (180-305)||(17765352-17765477)
chr2 (226-319)||(28252332-28252425)
chr2 (17-49)||(39449009-39449041)
chr2 (17-49)||(43513559-43513591)
[»] scaffold0035 (1 HSPs)
scaffold0035 (17-49)||(71938-71970)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 6e-62; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 180 - 328
Target Start/End: Original strand, 5734631 - 5734779
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  5734631 aatgaacggaatgataagatttttagaaatagacaaagttctttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaaggcttgta 5734730  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttc 328  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  5734731 atgttgtatttagttttggtactcatcagtggtggtcgagtccgctttc 5734779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 180 - 332
Target Start/End: Complemental strand, 12733875 - 12733723
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||||||| || | ||| ||||| |||||||||||||||| ||||||||||||||||||||||||| | |||    
T  12733875 aatgaaaggaatgataggctttttagaaatagacaaagtacgttgccacaattgctagataaagtgaaatcaacttctttgtggtggttaaaggctagta 12733776  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgt 332  Q
    ||||||||||||||||||| | ||| ||| ||| |||||| ||||||| ||||    
T  12733775 atgttgtatttagttttggcactcaacagcggtggtcgagcccgcttttatgt 12733723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 188 - 332
Target Start/End: Complemental strand, 21167967 - 21167823
Alignment:
Q  188 gaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgtaatgttgta 287  Q
    |||||||||||||||||| ||||||||| || ||||| ||||||||||||||||||||||  ||||||||||||||||| |||||| | | |||||||||    
T  21167967 gaatgataggatttttaggaatagacaaagtactttgccacaaatgctagataaagtgaaaccaacttctttgtggtggctaaaggctagcaatgttgta 21167868  T
Q  288 tttagttttggtattcatcagtggtagtcgagtccgctttcatgt 332  Q
    ||||||||||||| ||| ||||||| |||||| ||||||| ||||    
T  21167867 tttagttttggtactcaacagtggtggtcgagcccgcttttatgt 21167823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 180 - 332
Target Start/End: Original strand, 24767814 - 24767966
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||||| ||||| |  |||||||||||||||||| | |||||| |||||||||||||||||||||| ||| ||||||||||||||||||| | |||||    
T  24767814 aatgaacgtaatgacataatttttagaaatagacaaagctctttgccacaaatgctagataaagtgaaatcatcttctttgtggtggttaaaagcttgta 24767913  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgt 332  Q
    ||| |||||||||||| ||||||||| | |||| |||||||||||| ||||||    
T  24767914 atgctgtatttagtttgggtattcataattggtggtcgagtccgctctcatgt 24767966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 180 - 333
Target Start/End: Original strand, 18789269 - 18789422
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||| |||||||||||||||| ||  |  |||| |||||||||||||||||||||| ||||||||||||||||||||||||| | | |    
T  18789269 aatgaaaggaatgataagatttttagaaatagaaaaactaatttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaaggctagca 18789368  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtc 333  Q
    ||| ||||||||||||||||| |||||| |||| ||| || ||||||| |||||    
T  18789369 atgctgtatttagttttggtactcatcactggtggtcaagcccgcttttatgtc 18789422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 180 - 332
Target Start/End: Original strand, 15959204 - 15959356
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    ||||| ||||||||||| ||||||||||| |  ||  |||||||  |||||||| |||| ||||| || ||| ||||||||||||||||||| ||| |||    
T  15959204 aatgatcggaatgatagaatttttagaaacaagcagagttctttaccacaaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagttagta 15959303  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgt 332  Q
    ||||||| ||||||||||||| |||| | |||| |||||| || |||| ||||    
T  15959304 atgttgtttttagttttggtactcataattggtggtcgagcccacttttatgt 15959356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 180 - 300
Target Start/End: Original strand, 18651624 - 18651744
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||||||||||| |  |||||||||||||||||| | |||||| |||||||||||||||| || |  ||| ||||||||||||||||||| | |  ||    
T  18651624 aatgaacggaatgacaaaatttttagaaatagacaaagctctttgccacaaatgctagataaggttatatcatcttctttgtggtggttaaaagctcata 18651723  T
Q  280 atgttgtatttagttttggta 300  Q
    ||||||| |||||||||||||    
T  18651724 atgttgtgtttagttttggta 18651744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 319
Target Start/End: Original strand, 14373381 - 14373520
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    ||||| ||||||||||   |||||||||| |  ||  ||||||| ||||||||| |||| ||||| || ||| ||||||||||||||||||| | | |||    
T  14373381 aatgagcggaatgatatagtttttagaaacatgcagagttctttatcacaaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagctagta 14373480  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgag 319  Q
    ||||||| ||||| | |||||||||| | |||| ||||||    
T  14373481 atgttgtttttagctatggtattcataattggtggtcgag 14373520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 300
Target Start/End: Complemental strand, 32536645 - 32536525
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    ||||| ||||||||||| ||||||||||| || ||  | |||||  |||||||| |||| ||||| || ||| ||||||| ||||||||||| | |  ||    
T  32536645 aatgatcggaatgatagaatttttagaaacaggcacagctctttaccacaaatgttagacaaagtaaaatcatcttctttttggtggttaaaagctatta 32536546  T
Q  280 atgttgtatttagttttggta 300  Q
    ||||||| |||||||||||||    
T  32536545 atgttgtttttagttttggta 32536525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 33421907 - 33421939
Alignment:
Q  17 agttatcaattaaaggttgttcaaataacactc 49  Q
    |||| ||||||||||||||||||||||||||||    
T  33421907 agttgtcaattaaaggttgttcaaataacactc 33421939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 9e-61; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 180 - 334
Target Start/End: Complemental strand, 25824761 - 25824607
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  25824761 aatgaacagaatgataggatttttagaaatagacaatgttctttgcctcaaatgctagataaagtgaaatcaacttctttgtggtggttaaaggcttgta 25824662  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||||| ||||| ||||| |||||| ||||||||||||||    
T  25824661 atgttgtatttagttttggtactcatcggtggtggtcgagcccgctttcatgtct 25824607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 180 - 328
Target Start/End: Complemental strand, 31641507 - 31641359
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||| |||||||||||||||| |||||    
T  31641507 aatgaacggaatgataggatttttagaaatagacaaagttctttgccacaaatgctagataaagtgaaatcaacttcgttgtggtggttaaaggcttgta 31641408  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttc 328  Q
    ||||||||||||||||||||| ||| ||||||| |||||| ||||||||    
T  31641407 atgttgtatttagttttggtactcaccagtggtggtcgagcccgctttc 31641359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 180 - 328
Target Start/End: Original strand, 28536065 - 28536213
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||||| ||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||| |||||    
T  28536065 aatgaacgaaatgataggatttttagaaatagacgaagttctttgccacaaatgctagataaagtgaaatcaacgtctttgtggtggttaaaggcttgta 28536164  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttc 328  Q
    ||||||| ||||||||||||| ||||||||||| |||||| ||||||||    
T  28536165 atgttgtttttagttttggtactcatcagtggtggtcgagcccgctttc 28536213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 180 - 328
Target Start/End: Original strand, 35984181 - 35984328
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    ||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  35984181 aatgaacggaatgataggatttt-agaaatagacaaagttctttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaaggcttgta 35984279  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttc 328  Q
    ||||||| ||||||||||||| ||||||||||| |||||| || |||||    
T  35984280 atgttgtttttagttttggtactcatcagtggtggtcgagcccactttc 35984328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 180 - 334
Target Start/End: Complemental strand, 23238133 - 23237979
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||||||||||||||||||||| || ||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||| | | |    
T  23238133 aatgaaaggaatgataggatttttagaaatagacaaagtactttgccacagatgctagataatgtgaaatcaacttctttgtggtggttaaaggctagca 23238034  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||| ||||||||||||| ||||||||||| |||||| ||||||| ||||||    
T  23238033 atgttgtttttagttttggtactcatcagtggtggtcgagcccgcttttatgtct 23237979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 180 - 334
Target Start/End: Original strand, 12820339 - 12820493
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||||||| ||  | || ||||| |||||||||||||||| |||||||| |||||||||||||||| | |||    
T  12820339 aatgaaaggaatgataggctttttagaaatagacaaagtattgtgccacaattgctagataaagtgaaatcaacttcgttgtggtggttaaaggctggta 12820438  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||| | ||||||||||| |||||| ||||||| ||||||    
T  12820439 atgttgtatttagttttggcactcatcagtggtggtcgagcccgcttttatgtct 12820493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 180 - 332
Target Start/End: Original strand, 27117551 - 27117703
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||||||  || ||||| ||||| |||||||||||||||| ||||||||||||||||||||||||| | |||    
T  27117551 aatgaaaggaatgataggctttttagaaatagacagagtactttgccacaattgctagataaagtgaaatcaacttctttgtggtggttaaaggctagta 27117650  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgt 332  Q
    ||||||||||||||||||| | ||| ||||||| |||||| | ||||| ||||    
T  27117651 atgttgtatttagttttggcactcaacagtggtggtcgagcctgcttttatgt 27117703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 180 - 334
Target Start/End: Complemental strand, 12824949 - 12824795
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||||||| ||  | |  ||||| |||||||||||||||| |||||||| |||||||||||||||| | |||    
T  12824949 aatgaaaggaatgataggctttttagaaatagacaaagtattgtaccacaattgctagataaagtgaaatcaacttcgttgtggtggttaaaggctagta 12824850  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||| | ||||||||||| |||||| ||||||| ||||||    
T  12824849 atgttgtatttagttttggcactcatcagtggtggtcgagcccgcttttatgtct 12824795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 180 - 334
Target Start/End: Complemental strand, 8227776 - 8227622
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||| |||||||||||||| |||| || | ||| || ||||||| ||||| ||||| ||||| ||||||||||||||||||| | | |    
T  8227776 aatgaaaggaatgatatgatttttagaaataaacaaagtacgttgccataaatgcttgataatgtgaaatcaacctctttgtggtggttaaaggctagca 8227677  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||||| ||||||||||| |||||| ||||||| ||||||    
T  8227676 atgttgtatttagttttggtactcatcagtggtggtcgagcccgcttttatgtct 8227622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 180 - 334
Target Start/End: Original strand, 30732704 - 30732858
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||||||| ||  | || ||||| |||||||||||||||| |||||||| |||||||||||||||  | |||    
T  30732704 aatgaaaggaatgataggctttttagaaatagacaaagtattgtgccacaattgctagataaagtgaaatcaacttcgttgtggtggttaaagactagta 30732803  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||| | ||||||||||| |||||| | ||||| ||||||    
T  30732804 atgttgtatttagttttggcactcatcagtggtggtcgagcctgcttttatgtct 30732858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 180 - 334
Target Start/End: Complemental strand, 42513470 - 42513316
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||||||| ||  | || | ||| |||||||||||||||| | |||||| |||||||||||||||| | |||    
T  42513470 aatgaaaggaatgataggctttttagaaatagacaaagtattgtgcctcaattgctagataaagtgaaattaacttcgttgtggtggttaaaggctagta 42513371  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||| | ||||||||||| |||||| || |||| ||||||    
T  42513370 atgttgtatttagttttggcactcatcagtggtggtcgagccctcttttatgtct 42513316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 180 - 312
Target Start/End: Complemental strand, 3418533 - 3418401
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||||||| || || || | ||| | |||||||||||||| | |||||| |||||||||||||||| | |||    
T  3418533 aatgaaaggaatgataggctttttagaaatagacaaagtactgtgcctcaattactagataaagtgaaattaacttcgttgtggtggttaaaggctagta 3418434  T
Q  280 atgttgtatttagttttggtattcatcagtggt 312  Q
    ||||||||||||||||||| |  ||||||||||    
T  3418433 atgttgtatttagttttggcacacatcagtggt 3418401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 180 - 332
Target Start/End: Original strand, 19255513 - 19255665
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||||||||||| |  ||||||||||||||| || | |||||| |||| ||| |||||||||| || ||| |||||||||||||||||||   |  ||    
T  19255513 aatgaacggaatgacaatatttttagaaatagaaaaagctctttgccacatatgttagataaagtcaaatcatcttctttgtggtggttaaaacctcata 19255612  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgt 332  Q
    ||||||||||||||||||||| ||||   |||| |||||| ||||||||||||    
T  19255613 atgttgtatttagttttggtactcatatttggtggtcgagcccgctttcatgt 19255665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 180 - 332
Target Start/End: Complemental strand, 42927881 - 42927729
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||||||||||| |  ||| |||||||| ||||| | |||||| ||||||||||||||||||| || ||| ||||||||||||||||||| | | |||    
T  42927881 aatgaacggaatgacaatattcttagaaattgacaaagctctttgccacaaatgctagataaagttaaatcatcttctttgtggtggttaaaagctcgta 42927782  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgt 332  Q
    ||||||||||||| |||| || |||| | |||| |||||| || |||| ||||    
T  42927781 atgttgtatttagctttgatactcataattggtggtcgagcccacttttatgt 42927729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 180 - 334
Target Start/End: Complemental strand, 26059641 - 26059487
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | | |    
T  26059641 aatgaaaggaatgataggatttttagaaatagacaatgtactttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaaggctagca 26059542  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||||| ||||||||||| |||||| ||||||| ||||||    
T  26059541 atgttgtatttagttttggtactcatcagtggtggtcgagcccgcttttatgtct 26059487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 180 - 332
Target Start/End: Complemental strand, 6259567 - 6259415
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| |||||||||||||||||| |||||| | | |    
T  6259567 aatgaaaggaatgataggatttttagaaatagacaaagtactttgccacaaatgctagataaagtgaaatcaacttctttgtggtggctaaaggctagca 6259468  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgt 332  Q
    ||||||||||||||||||||| ||| || |||| |||||| ||||||| ||||    
T  6259467 atgttgtatttagttttggtactcaacactggtggtcgagcccgcttttatgt 6259415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 180 - 332
Target Start/End: Original strand, 12813594 - 12813746
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| |||||||||||| |||||||||||||||| || || || |||||||| ||||||||||||| ||||||||||||||||||||||||| | | |    
T  12813594 aatgaaaggaatgataggaattttagaaatagacaaagtactctgccacaaatgttagataaagtgaaatcaacttctttgtggtggttaaaggctagca 12813693  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgt 332  Q
    ||||||||||||||||| ||||||||||||||| |||||| ||||||| ||||    
T  12813694 atgttgtatttagttttagtattcatcagtggtggtcgagcccgcttttatgt 12813746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 180 - 334
Target Start/End: Original strand, 11909495 - 11909649
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||||||| || || || ||||| |||||||||||||||| |||||||| |||||||||||||||| | |||    
T  11909495 aatgaaaggaatgataggctttttagaaatagacaaagtactgtgccacaattgctagataaagtgaaatcaacttcgttgtggtggttaaaggctagta 11909594  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||| | ||||||||||| |||||| ||||||| ||||||    
T  11909595 atgttgtatttagttttggcactcatcagtggtggtcgagcccgcttttatgtct 11909649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 180 - 334
Target Start/End: Complemental strand, 51052230 - 51052076
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||||||| ||  | || ||||| |||||||||||||||| |||||||| |||||||||||||||  | |||    
T  51052230 aatgaaaggaatgataggctttttagaaatagacaaagtattgtgccacaattgctagataaagtgaaatcaacttcgttgtggtggttaaagactagta 51052131  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||| | ||||||||||| |||||| ||||||| ||||||    
T  51052130 atgttgtatttagttttggcactcatcagtggtggtcgagcccgcttttatgtct 51052076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 180 - 332
Target Start/End: Complemental strand, 4842154 - 4841997
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttct-----ttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggt 274  Q
    |||||| ||||||||||||||||||||||||||||| || ||     |||  ||||||| ||||||||||||| |||||||||||||||||||||||||     
T  4842154 aatgaaaggaatgataggatttttagaaatagacaaagtactcctccttgcgacaaatgttagataaagtgaaatcaacttctttgtggtggttaaaggc 4842055  T
Q  275 ttgtaatgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgt 332  Q
    | | |||  ||||||||||||||||||||||||||||| |||||| ||||||| ||||    
T  4842054 tagcaatcctgtatttagttttggtattcatcagtggtggtcgagcccgcttttatgt 4841997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 180 - 334
Target Start/End: Complemental strand, 35540799 - 35540645
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||||||| || || || | ||| | |||||||||||||| | |||||| |||||||||||||||| | |||    
T  35540799 aatgaaaggaatgataggctttttagaaatagacaaagtactgtgcctcaattactagataaagtgaaattaacttcgttgtggtggttaaaggctagta 35540700  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||| |  |||||||||| |||||| || |||| ||||||    
T  35540699 atgttgtatttagttttggcacacatcagtggtggtcgagccctcttttatgtct 35540645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 187 - 332
Target Start/End: Complemental strand, 13352057 - 13351912
Alignment:
Q  187 ggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgtaatgttgt 286  Q
    ||||||||||||||||||||||||||||| | |||||| ||||||||||||| ||||| || | |  |||||||||||||||||| | | ||||||||||    
T  13352057 ggaatgataggatttttagaaatagacaaagctctttgccacaaatgctagacaaagttaaataattttctttgtggtggttaaaagctcgtaatgttgt 13351958  T
Q  287 atttagttttggtattcatcagtggtagtcgagtccgctttcatgt 332  Q
    |||||| ||||||| |||| | |||| || ||| ||||||||||||    
T  13351957 atttagctttggtactcataattggtggttgagcccgctttcatgt 13351912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 180 - 334
Target Start/End: Complemental strand, 6050352 - 6050198
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||||||| ||  | || |  || | |||||||||||||| | |||||| |||||||||||||||| | |||    
T  6050352 aatgaaaggaatgataggctttttagaaatagacaaagtattgtgcctaaatttctagataaagtgaaattaacttcgttgtggtggttaaaggctagta 6050253  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||| | ||||||||||| |||||| || |||| ||||||    
T  6050252 atgttgtatttagttttggcactcatcagtggtggtcgagccctcttttatgtct 6050198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 242 - 334
Target Start/End: Original strand, 24547518 - 24547610
Alignment:
Q  242 agtgaactcaacttctttgtggtggttaaaggtttgtaatgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    |||||| ||||||||||||| ||||||||| | |||||||| ||||||||||||||||| |||| | |||| |||||| | ||||||||||||    
T  24547518 agtgaaatcaacttctttgtagtggttaaaagcttgtaatgctgtatttagttttggtactcataattggtggtcgagcctgctttcatgtct 24547610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 292
Target Start/End: Original strand, 47623461 - 47623567
Alignment:
Q  186 cggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgtaatgttg 285  Q
    |||||||||||  |||||||||| || ||  | |||||  |||||||| |||| ||||| || ||| ||||||||||||||||||| | | |||||||||    
T  47623461 cggaatgatagagtttttagaaagaggcagagctctttaccacaaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagctagtaatgttg 47623560  T
Q  286 tatttag 292  Q
    | |||||    
T  47623561 tttttag 47623567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 13082179 - 13082230
Alignment:
Q  53 aatgttgaaagtagagagataagggaagagagatgacacgatatatttattt 104  Q
    |||||||||| || |||||||||||| |||||||||||| |||||| |||||    
T  13082179 aatgttgaaaataaagagataagggatgagagatgacacaatatatatattt 13082230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 44789067 - 44789035
Alignment:
Q  17 agttatcaattaaaggttgttcaaataacactc 49  Q
    |||| ||||||||||||||||||||||||||||    
T  44789067 agttgtcaattaaaggttgttcaaataacactc 44789035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 46911440 - 46911472
Alignment:
Q  17 agttatcaattaaaggttgttcaaataacactc 49  Q
    |||| ||||||||||||||||||||||||||||    
T  46911440 agttgtcaattaaaggttgttcaaataacactc 46911472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 180 - 334
Target Start/End: Original strand, 235829 - 235983
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||||| ||||||| ||||||||||||||||||| | |||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  235829 aatgaacgaaatgatatgatttttagaaatagacaaagctctttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaaggcttgta 235928  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||||| ||| ||||||| |||||||| ||||||| ||||    
T  235929 atgttgtatttagttttggtactcaacagtggtggtcgagtctgctttcacgtct 235983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 180 - 319
Target Start/End: Complemental strand, 47876733 - 47876594
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||| | |||    
T  47876733 aatgaaaggaatgataggatttttagaaatagacaaagttctttgccacaaatgctagaaaaagtgaaatcaacttctttgtggtggttaaaggctagta 47876634  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgag 319  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  47876633 atgttgtatttagttttggtactcatcagtggtggtcgag 47876594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 187 - 328
Target Start/End: Complemental strand, 17720387 - 17720246
Alignment:
Q  187 ggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgtaatgttgt 286  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  17720387 ggaatgataggctttttagaaatagacaaagttctttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaaggcttgtaatgttgt 17720288  T
Q  287 atttagttttggtattcatcagtggtagtcgagtccgctttc 328  Q
     ||||||||||||| ||| ||||||| |||||| ||||||||    
T  17720287 ttttagttttggtactcaccagtggtggtcgagcccgctttc 17720246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 180 - 334
Target Start/End: Complemental strand, 29967725 - 29967571
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||||||||||||||||||||||||||||||||| || |  || |||||||||||||||| ||||| ||||| ||||||||||||||||||| | |||    
T  29967725 aatgaacggaatgataggatttttagaaatagacaaagtacgctgccacaaatgctagataatgtgaaatcaacctctttgtggtggttaaaggctagta 29967626  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||| ||||||||||||| ||||||||||| |||||| ||||||| ||||||    
T  29967625 atgttgtttttagttttggtactcatcagtggtggtcgagcccgcttttatgtct 29967571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 180 - 334
Target Start/End: Original strand, 11277642 - 11277797
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaa-cttctttgtggtggttaaaggtttgt 278  Q
    |||||| ||||||||||||||||||||||||||||| ||  |||| ||||||| |||||||||||||| |||| ||||||||||||||||||||| | |     
T  11277642 aatgaaaggaatgataggatttttagaaatagacaaagtattttgccacaaatactagataaagtgaaatcaaacttctttgtggtggttaaaggctagc 11277741  T
Q  279 aatgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    |||||||||||||||||||||| ||||||||||| |||||| || |||| ||||||    
T  11277742 aatgttgtatttagttttggtactcatcagtggtggtcgagcccacttttatgtct 11277797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 190 - 333
Target Start/End: Complemental strand, 37919284 - 37919141
Alignment:
Q  190 atgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgtaatgttgtatt 289  Q
    |||||||||||||||||||||||||| || || || |||||||| ||||||||||||| ||||||||||||||||||||||||| | | |||||||||||    
T  37919284 atgataggatttttagaaatagacaaagtactctgccacaaatgttagataaagtgaaatcaacttctttgtggtggttaaaggctagcaatgttgtatt 37919185  T
Q  290 tagttttggtattcatcagtggtagtcgagtccgctttcatgtc 333  Q
    ||||||||||| ||||||||||| |||||  ||||||| |||||    
T  37919184 tagttttggtactcatcagtggtggtcgaacccgcttttatgtc 37919141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 180 - 334
Target Start/End: Original strand, 31177695 - 31177849
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||||||| || || || | ||| |||||||||||||||| | |||||| ||||||||| |||||||| |||    
T  31177695 aatgaaaggaatgataggctttttagaaatagacaaagtactgtgcctcaattgctagataaagtgaagttaacttcgttgtggtggctaaaggttagta 31177794  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||| | ||||||||||| |||||| || |||| ||||||    
T  31177795 atgttgtatttagttttggcactcatcagtggtggtcgagcccacttttatgtct 31177849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 207 - 334
Target Start/End: Original strand, 38890137 - 38890264
Alignment:
Q  207 aatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgtaatgttgtatttagttttggtattcatc 306  Q
    ||||||||| || ||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||| | |||||    
T  38890137 aatagacaaagtactttgccacaattgctagataaagtgaaatcaacttctttgtggtggttaaaggttagtaatgttgtatttaattttggcactcatc 38890236  T
Q  307 agtggtagtcgagtccgctttcatgtct 334  Q
    |||||| || ||| ||||||| ||||||    
T  38890237 agtggtggttgagcccgcttttatgtct 38890264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 334
Target Start/End: Original strand, 4938518 - 4938672
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||| ||| || |  || | ||| |||| ||||||||||| | |||||| ||||||||| |||||| | |||    
T  4938518 aatgaaaggaatgataggctttttagaaatagtcaaagtacagtgcctcaattgctcgataaagtgaagttaacttcgttgtggtggctaaaggctagta 4938617  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||| | ||||||||||| |||||| || |||| ||||||    
T  4938618 atgttgtatttagttttggcactcatcagtggtggtcgagcccacttttatgtct 4938672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 16708308 - 16708340
Alignment:
Q  17 agttatcaattaaaggttgttcaaataacactc 49  Q
    |||| ||||||||||||||||||||||||||||    
T  16708308 agttgtcaattaaaggttgttcaaataacactc 16708340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 17682544 - 17682576
Alignment:
Q  17 agttatcaattaaaggttgttcaaataacactc 49  Q
    |||| ||||||||||||||||||||||||||||    
T  17682544 agttgtcaattaaaggttgttcaaataacactc 17682576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 180 - 328
Target Start/End: Complemental strand, 9922351 - 9922203
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||||||||||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  9922351 aatgaacggaatgaaaggctttttagaaatagacaaagttctttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaaggcttgta 9922252  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttc 328  Q
    ||||||| ||||||||||||| ||| ||||||| |||||| ||||||||    
T  9922251 atgttgtttttagttttggtactcaccagtggtggtcgagcccgctttc 9922203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 180 - 333
Target Start/End: Complemental strand, 32266314 - 32266161
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||| ||||| ||||||||| ||||||||||||||  | | |    
T  32266314 aatgaaaggaatgataggatttttagaaatagacaaagtactttgccacaaatgctagataatgtgaaatcaacttctctgtggtggttaaagactagaa 32266215  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtc 333  Q
    ||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||    
T  32266214 atgttgtatttagttttggtactcatcagtggtggtcgagcccgcttttatgtc 32266161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 180 - 332
Target Start/End: Complemental strand, 13396138 - 13395986
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||||||||||||||||||||| || || || |||||||| ||||||||||||| ||||||||||||||||||||||||| | | |    
T  13396138 aatgaaaggaatgataggatttttagaaatagacaaagtactctgccacaaatgttagataaagtgaaatcaacttctttgtggtggttaaaggctagca 13396039  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgt 332  Q
    ||| ||||||||||||||||| ||||||||||| |||||| ||||||| ||||    
T  13396038 atgctgtatttagttttggtactcatcagtggtggtcgagcccgcttttatgt 13395986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 180 - 332
Target Start/End: Original strand, 41665759 - 41665911
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||||||||||||||||||||| || || || |||||||  ||||||||||||| ||||||||||||||||||||||||| | | |    
T  41665759 aatgaaaggaatgataggatttttagaaatagacaaagtactctgccacaaattttagataaagtgaaatcaacttctttgtggtggttaaaggctagca 41665858  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgt 332  Q
    ||||||||||||||||||||| ||||||||||| |||||| ||||||| ||||    
T  41665859 atgttgtatttagttttggtactcatcagtggtggtcgagcccgcttttatgt 41665911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 180 - 334
Target Start/End: Original strand, 32567655 - 32567808
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||| ||||| ||||||||||||||||||||||| | | | |    
T  32567655 aatgaaaggaatgataggatttttagaaatagacaaagtactttgccacaaatgctagataatgtgaaatcaacttctttgtggtggttaaa-gctagca 32567753  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    |||||||||||||||||| || ||||||||||| |||||| ||||||| ||||||    
T  32567754 atgttgtatttagttttgatactcatcagtggtggtcgagcccgcttttatgtct 32567808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 180 - 334
Target Start/End: Complemental strand, 7924136 - 7923982
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||||||| || || || | ||| |||||||||||||||| | |||||| |||||||||||||||| | |||    
T  7924136 aatgaaaggaatgataggctttttagaaatagacaaagtactgtgcctcaattgctagataaagtgaaattaacttcgttgtggtggttaaaggctagta 7924037  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||| | ||||||||||| |||||| || |||| ||||||    
T  7924036 atgttgtatttagttttggcactcatcagtggtggtcgagccctcttttatgtct 7923982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 180 - 332
Target Start/End: Complemental strand, 171853 - 171701
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||| ||||||||||  || ||||| ||| | |||||||||||||||| |||||||||||||| |||||||||| | |||    
T  171853 aatgaaaggaatgataggctttttcgaaatagacagagtactttgccactattgctagataaagtgaaatcaacttctttgtgatggttaaaggctagta 171754  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgt 332  Q
    ||||||||||||||||||| | ||| ||||||| ||| || ||||||| ||||    
T  171753 atgttgtatttagttttggcactcaacagtggtggtcaagcccgcttttatgt 171701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 180 - 334
Target Start/End: Complemental strand, 8299553 - 8299399
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||||||  || || || | ||| |||||||||||||||| | |||||| ||||||||| |||||| | |||    
T  8299553 aatgaaaggaatgataggctttttagaaatagacatagtactgtgcctcaattgctagataaagtgaaattaacttcgttgtggtggctaaaggctagta 8299454  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||| | ||||||||||| |||||| || |||| ||||||    
T  8299453 atgttgtatttagttttggcactcatcagtggtggtcgagccctcttttatgtct 8299399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 180 - 334
Target Start/End: Complemental strand, 20496834 - 20496680
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||||||| || || || | ||| | |||||||||||||| | |||||| |||||||||||||||| | |||    
T  20496834 aatgaaaggaatgataggctttttagaaatagacaaagtactgtgcctcaattactagataaagtgaaattaacttcgttgtggtggttaaaggctagta 20496735  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||| |  |||||||||| |||||| || |||| ||||||    
T  20496734 atgttgtatttagttttggcacacatcagtggtggtcgagccctcttttatgtct 20496680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 183 - 305
Target Start/End: Complemental strand, 5181416 - 5181294
Alignment:
Q  183 gaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgtaatg 282  Q
    ||||| ||||||| ||| |||||||||||| || |||||||  |||| ||| |||||||||| || ||| ||| ||||||||||||||| ||| ||||||    
T  5181416 gaacgaaatgatatgatatttagaaatagagaaagttctttaccacatatgttagataaagtaaaatcatcttatttgtggtggttaaaagttagtaatg 5181317  T
Q  283 ttgtatttagttttggtattcat 305  Q
    |||||||||| ||| ||| ||||    
T  5181316 ttgtatttagctttagtactcat 5181294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 7375700 - 7375664
Alignment:
Q  19 ttatcaattaaaggttgttcaaataacactcttcaat 55  Q
    ||||||||||||||||||||||||||||||| |||||    
T  7375700 ttatcaattaaaggttgttcaaataacactcctcaat 7375664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 34137400 - 34137492
Alignment:
Q  227 acaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgtaatgttgtatttagttttggtattcatcagtggtagtcgag 319  Q
    ||||||| |||| ||||| || ||| |||| |||||||||||||| | | |||||||||| ||||| ||||||| |||| | |||| ||||||    
T  34137400 acaaatgttagacaaagtaaaatcatcttcattgtggtggttaaaagctagtaatgttgtttttagctttggtactcataattggtggtcgag 34137492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 29991559 - 29991591
Alignment:
Q  17 agttatcaattaaaggttgttcaaataacactc 49  Q
    |||| ||||||||||||||||||||||||||||    
T  29991559 agttgtcaattaaaggttgttcaaataacactc 29991591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 34718263 - 34718295
Alignment:
Q  17 agttatcaattaaaggttgttcaaataacactc 49  Q
    |||| ||||||||||||||||||||||||||||    
T  34718263 agttgtcaattaaaggttgttcaaataacactc 34718295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 41704362 - 41704318
Alignment:
Q  12 tcatcagttatcaattaaa-ggttgttcaaataacactcttcaat 55  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||||    
T  41704362 tcatcagttatcaattaaatggttgttcaaataatacttttcaat 41704318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 180 - 332
Target Start/End: Original strand, 40930918 - 40931070
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  40930918 aatgaacgaaatgataggatttttagaaatagacaaagttctttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaaggcttgta 40931017  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgt 332  Q
    ||||||| |||||||| |||| ||| ||||||| |||||| |||||| |||||    
T  40931018 atgttgtttttagtttcggtactcaacagtggtggtcgagcccgcttgcatgt 40931070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 180 - 334
Target Start/End: Original strand, 34333205 - 34333359
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||||||||||||||||||||| ||  |||| |||||||||||||||||||||| ||||||||||||||||||||||||| |   |    
T  34333205 aatgaaaggaatgataggatttttagaaatagacaaagtattttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaaggctaaca 34333304  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||||| ||||||||||| |||||| ||||||| ||||||    
T  34333305 atgttgtatttagttttggtactcatcagtggtggtcgagcccgcttttatgtct 34333359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 180 - 334
Target Start/End: Complemental strand, 7312527 - 7312373
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||||||| || || || ||||| |||||||||||||||| |||||||| |||||||||||||||| | |||    
T  7312527 aatgaaaggaatgataggctttttagaaatagacaaagtactgtgccacaattgctagataaagtgaaatcaacttcgttgtggtggttaaaggctagta 7312428  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||| | || |||||||| |||||| ||||||| ||||||    
T  7312427 atgttgtatttagttttggcactcgtcagtggtggtcgagcccgcttttatgtct 7312373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 180 - 334
Target Start/End: Complemental strand, 2364027 - 2363873
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||||||| || || || | ||| |||||||||||||||| | |||||| |||||||||||||||| | |||    
T  2364027 aatgaaaggaatgataggctttttagaaatagacaaagtactgtgcctcaattgctagataaagtgaaattaacttcgttgtggtggttaaaggctagta 2363928  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||| | ||||||||||| |||||| || |||| ||||||    
T  2363927 atgttgtatttagttttggcactcatcagtggtggtcgagccctcttttatgtct 2363873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 334
Target Start/End: Original strand, 10323961 - 10324115
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||||||| || |  || | ||| |||| ||||||||||| | |||||| ||||||||| | |||| | |||    
T  10323961 aatgaaaggaatgataggctttttagaaatagacaaagtacagtgcctcaattgctcgataaagtgaagttaacttcgttgtggtggctcaaggctagta 10324060  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||| | ||||||||||| |||||| || |||| ||||||    
T  10324061 atgttgtatttagttttggcactcatcagtggtggtcgagcccacttttatgtct 10324115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 334
Target Start/End: Original strand, 19920619 - 19920773
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||| ||||||| ||| || |  || ||||| || ||||||||||||| |||||| | |||||||||||||| | | | |    
T  19920619 aatgaaaggaatgataggctttttcgaaatagccaaagtacagtgccacaattgttagataaagtgaaatcaactgcgttgtggtggttaaaagctagaa 19920718  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||| |  |||||||||| |||||| ||||| | ||||||    
T  19920719 atgttgtatttagttttggcacccatcagtggtggtcgagcccgctcttatgtct 19920773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 249 - 334
Target Start/End: Complemental strand, 10313059 - 10312974
Alignment:
Q  249 tcaacttctttgtggtggttaaaggtttgtaatgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||||||| |  ||||| ||||||||||||||||||| |||||| |||| |||||  ||||||||||||||    
T  10313059 tcaacttctttgtggtggttaaaagcgtgtaacgttgtatttagttttggtactcatcattggtggtcgaacccgctttcatgtct 10312974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 249 - 334
Target Start/End: Complemental strand, 15827392 - 15827307
Alignment:
Q  249 tcaacttctttgtggtggttaaaggtttgtaatgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||||||| | ||| |||| ||||||||||||||||| |||||| || |  ||||  ||||||||||||||    
T  15827392 tcaacttctttgtggtggttaaaagcttgcaatgctgtatttagttttggtactcatcattgatgatcgaacccgctttcatgtct 15827307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 270 - 334
Target Start/End: Complemental strand, 926781 - 926717
Alignment:
Q  270 aaggtttgtaatgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    |||| |||||||||||||||||||| ||||| |||||| |||| |||||| ||||||||||||||    
T  926781 aaggcttgtaatgttgtatttagttatggtactcatcattggtggtcgagcccgctttcatgtct 926717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 31376689 - 31376657
Alignment:
Q  17 agttatcaattaaaggttgttcaaataacactc 49  Q
    |||| ||||||||||||||||||||||||||||    
T  31376689 agttgtcaattaaaggttgttcaaataacactc 31376657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 180 - 334
Target Start/End: Original strand, 47686285 - 47686439
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||||| | || ||||| ||||||||||||| |||||||| ||||||||||||||||||||||||| | | |    
T  47686285 aatgaaaggaatgataggctttttagaaatagactaagtactttgccacaaatgctagacaaagtgaaatcaacttctttgtggtggttaaaggctagca 47686384  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||| | ||||||||||| |||||| ||||||| ||||||    
T  47686385 atgttgtatttagttttggcactcatcagtggtggtcgagcccgcttttatgtct 47686439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 187 - 335
Target Start/End: Complemental strand, 19755006 - 19754858
Alignment:
Q  187 ggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgtaatgttgt 286  Q
    ||||||||||||||||||||||||||||| || || || |||||||| ||||||||||||| ||||||||||||||||||||||||| | | |||| |||    
T  19755006 ggaatgataggatttttagaaatagacaaggtactctgccacaaatgttagataaagtgaaatcaacttctttgtggtggttaaaggctagcaatgctgt 19754907  T
Q  287 atttagttttggtattcatcagtggtagtcgagtccgctttcatgtctc 335  Q
    |||||||||| ||| ||||||||||| |||||| ||||||| |||||||    
T  19754906 atttagtttttgtactcatcagtggtggtcgagcccgcttttatgtctc 19754858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 187 - 335
Target Start/End: Original strand, 19784800 - 19784948
Alignment:
Q  187 ggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgtaatgttgt 286  Q
    ||||||||||||||||||||||||||||| || || || |||||||| ||||||||||||| ||||||||||||||||||||||||| | | |||| |||    
T  19784800 ggaatgataggatttttagaaatagacaaggtactctgccacaaatgttagataaagtgaaatcaacttctttgtggtggttaaaggctagcaatgctgt 19784899  T
Q  287 atttagttttggtattcatcagtggtagtcgagtccgctttcatgtctc 335  Q
    |||||||||| ||| ||||||||||| |||||| ||||||| |||||||    
T  19784900 atttagtttttgtactcatcagtggtggtcgagcccgcttttatgtctc 19784948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 199 - 332
Target Start/End: Complemental strand, 15739952 - 15739819
Alignment:
Q  199 tttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgtaatgttgtatttagttttgg 298  Q
    ||||||||||||||||| || ||||| |||||||||||||||||||||| |||||||||||||||||| |||||| | | ||||||||||||||||||||    
T  15739952 tttttagaaatagacaaagtactttgccacaaatgctagataaagtgaaatcaacttctttgtggtggctaaaggctagcaatgttgtatttagttttgg 15739853  T
Q  299 tattcatcagtggtagtcgagtccgctttcatgt 332  Q
    || ||| ||||||| |||||| ||||||| ||||    
T  15739852 tactcaacagtggtggtcgagcccgcttttatgt 15739819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 188 - 334
Target Start/End: Original strand, 160089 - 160235
Alignment:
Q  188 gaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgtaatgttgta 287  Q
    |||||||||| ||||||||||||||||| || || || ||||| | |||||||||||||| | |||||| |||||||||||||||| | |||||||||||    
T  160089 gaatgataggctttttagaaatagacaaagtactgtgccacaattactagataaagtgaaattaacttcgttgtggtggttaaaggctagtaatgttgta 160188  T
Q  288 tttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||| |  |||||||||| |||||| || |||| ||||||    
T  160189 tttagttttggcaaacatcagtggtggtcgagccctcttttatgtct 160235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 180 - 334
Target Start/End: Original strand, 23642981 - 23643135
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| |||||||||||||| || || |  || | ||| |||||||||||||||| | |||||| |||||||||||||||| | |||    
T  23642981 aatgaaaggaatgataggctttttagaaatagataaagtaccgtgcctcaattgctagataaagtgaaattaacttcgttgtggtggttaaaggctagta 23643080  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||| | ||||||||||| |||||| || |||| ||||||    
T  23643081 atgttgtatttagttttggcactcatcagtggtggtcgagccctcttttatgtct 23643135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 182 - 332
Target Start/End: Complemental strand, 7403661 - 7403510
Alignment:
Q  182 tgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatg-ctagataaagtgaactcaacttctttgtggtggttaaaggtttgtaa 280  Q
    |||||||||||| | ||||||||||||||||||| | |||||| |||||||| |||||||||||||| |||  ||||||||||||||||||   | | ||    
T  7403661 tgaacggaatgacaagatttttagaaatagacaaagctctttgccacaaatgcctagataaagtgaaatcatattctttgtggtggttaaaaactcgcaa 7403562  T
Q  281 tgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgt 332  Q
    |||||||||||| |||| ||||||| | |||| |||||| |||| |||||||    
T  7403561 tgttgtatttagctttgatattcataattggtggtcgagcccgcattcatgt 7403510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 180 - 319
Target Start/End: Original strand, 13271281 - 13271420
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| |||||||||||||| || ||    || ||||| |||||||||||||||| | |||||| |||||||||||||||| | |||    
T  13271281 aatgaaaggaatgataggctttttagaaatagaaaaagtaaagtgacacaattgctagataaagtgaaattaacttcgttgtggtggttaaaggctagta 13271380  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgag 319  Q
    |||||||||||| |||||| | ||||||||||| ||||||    
T  13271381 atgttgtatttatttttggcactcatcagtggtggtcgag 13271420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 334
Target Start/End: Complemental strand, 47418555 - 47418401
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||| ||| || |  || | ||| |||| ||||||||||| | |||||| ||||||||| |||||| | |||    
T  47418555 aatgaaaggaatgataggctttttagaaatagtcaaagtacagtgcctcaattgctcgataaagtgaagttaacttcgttgtggtggctaaaggctagta 47418456  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||| | ||||||||||| |||||| || |||| ||||||    
T  47418455 atgttgtatttagttttggcactcatcagtggtggtcgagcccacttttatgtct 47418401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 20788669 - 20788760
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaa 271  Q
    |||||||||||||| | ||||||||||||||||||| | |||||| |||||||||||||||| || |  ||| |||||||||||||||||||    
T  20788669 aatgaacggaatgacatgatttttagaaatagacaaagctctttgccacaaatgctagataaggttatatcatcttctttgtggtggttaaa 20788760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 327
Target Start/End: Original strand, 17402076 - 17402223
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||||||||||||||| | |||||||| ||| || | |||||  |||| ||| |||||||||| || ||| |||||||||||| |||||||| | |||    
T  17402076 aatgaacggaatgataggctatttagaaacagaaaaagctctttaccacatatgttagataaagtaaaatcatcttctttgtggtagttaaaggctagta 17402175  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgcttt 327  Q
    |||||||| ||   ||||||| |||| | |||| |||||| |||||||    
T  17402176 atgttgtagttcactttggtactcataattggtggtcgagcccgcttt 17402223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 255 - 334
Target Start/End: Complemental strand, 8890698 - 8890619
Alignment:
Q  255 tctttgtggtggttaaaggtttgtaatgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||| | |||||||| ||||||||||||||||| |||| | |||| |||||| | ||||||||||||    
T  8890698 tctttgtggtggttaaaagcttgtaatgctgtatttagttttggtactcataattggtggtcgagcctgctttcatgtct 8890619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 249 - 334
Target Start/End: Complemental strand, 16427230 - 16427145
Alignment:
Q  249 tcaacttctttgtggtggttaaaggtttgtaatgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||| ||||| |  ||||| | ||||||||||||||||| |||||| |||| |||||  ||||||||||||||    
T  16427230 tcaacttctttgtggtgattaaaagcatgtaaagatgtatttagttttggtactcatcattggtggtcgaacccgctttcatgtct 16427145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 319
Target Start/End: Original strand, 23163022 - 23163160
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    ||||| |||||||||||  |||||||||| || ||  | ||||| ||||||||| |||| ||||| || ||| ||||||||||||||||||| | | |||    
T  23163022 aatgagcggaatgatagagtttttagaaacaggcagagctctttatcacaaatg-tagacaaagtaaaatcatcttctttgtggtggttaaaagctagta 23163120  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgag 319  Q
    ||||||| ||||| | ||||| |||| | |||| ||||||    
T  23163121 atgttgtttttagctatggtactcataattggtggtcgag 23163160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 334
Target Start/End: Complemental strand, 43019603 - 43019537
Alignment:
Q  268 taaaggtttgtaatgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    |||||| | ||||| |||||||||||||||| | ||||||||||| |||||||||||||| ||||||    
T  43019603 taaaggctagtaatattgtatttagttttggcactcatcagtggtggtcgagtccgcttttatgtct 43019537  T

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Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 11587625 - 11587713
Alignment:
Q  217 gttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgtaatgttgtatttagttttggtattcat 305  Q
    |||||||  |||||||| |||| ||||| || ||| ||||||||||||||||||| | | |||||||||| ||||| ||||||| ||||    
T  11587625 gttctttaccacaaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagctagtaatgttgtttttagctttggtactcat 11587713  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 13263321 - 13263289
Alignment:
Q  17 agttatcaattaaaggttgttcaaataacactc 49  Q
    ||||||||| |||||||||||||||||||||||    
T  13263321 agttatcaactaaaggttgttcaaataacactc 13263289  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 18624143 - 18624111
Alignment:
Q  17 agttatcaattaaaggttgttcaaataacactc 49  Q
    |||| ||||||||||||||||||||||||||||    
T  18624143 agttgtcaattaaaggttgttcaaataacactc 18624111  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 51887810 - 51887842
Alignment:
Q  17 agttatcaattaaaggttgttcaaataacactc 49  Q
    |||| ||||||||||||||||||||||||||||    
T  51887810 agttgtcaattaaaggttgttcaaataacactc 51887842  T

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Target: scaffold0369 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 188 - 332
Target Start/End: Original strand, 11603 - 11747
Alignment:
Q  188 gaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgtaatgttgta 287  Q
    |||||||||| ||||||||||||||||| || ||||| ||||| | |||||||||||||| ||||||||||||||||||||||||| | |||||||||||    
T  11603 gaatgataggctttttagaaatagacaaagtactttgccacaatttctagataaagtgaaatcaacttctttgtggtggttaaaggctagtaatgttgta 11702  T
Q  288 tttagttttggtattcatcagtggtagtcgagtccgctttcatgt 332  Q
    ||||||||||  | ||||||||||| |||||| ||||||| ||||    
T  11703 tttagttttgtcactcatcagtggtggtcgagcccgcttttatgt 11747  T

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Target: scaffold0511 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 180 - 333
Target Start/End: Original strand, 5802 - 5955
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||| |||||||||||||||| ||  |  |||| |||||||||||||||||||||| ||||||||||||||||||||||||| | | |    
T  5802 aatgaaaggaatgataagatttttagaaatagataaactaatttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaaggctagca 5901  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtc 333  Q
    ||| ||||||||||||||||| |||||| |||| ||| || ||||||| |||||    
T  5902 atgctgtatttagttttggtactcatcactggtggtcaagcccgcttttatgtc 5955  T

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Target: scaffold0034 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 180 - 334
Target Start/End: Original strand, 106233 - 106387
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| ||||||||||| ||||||||||||||||| ||  | || | ||| |||||||||||||||| | |||||| |||||||||||||||| | |||    
T  106233 aatgaaaggaatgataggctttttagaaatagacaaagtattgtgcctcaattgctagataaagtgaaattaacttcgttgtggtggttaaaggctagta 106332  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgtct 334  Q
    ||||||||||||||||||| | ||||||||||| |||||| || |||| ||||||    
T  106333 atgttgtatttagttttggcactcatcagtggtggtcgagccctcttttatgtct 106387  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 180 - 298
Target Start/End: Complemental strand, 4551919 - 4551801
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||| | ||||||||| ||||||||||||||||| || || || ||||| | |||||||||||||| |||||||| |||||||||||||||| | |||    
T  4551919 aatgaaagaaatgataggctttttagaaatagacaaagtactgtgccacaattactagataaagtgaaatcaacttcgttgtggtggttaaaggctagta 4551820  T
Q  280 atgttgtatttagttttgg 298  Q
    |||||||||||||||||||    
T  4551819 atgttgtatttagttttgg 4551801  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 41206756 - 41206631
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||||| ||||| | ||||||||||||||||||| | |||||  |||| ||| |||||||||| || ||| ||||||| |||||||||||   | |||    
T  41206756 aatgaacgaaatgaaatgatttttagaaatagacaaagctctttaccacacatgttagataaagtcaaatcatcttctttatggtggttaaaatctcgta 41206657  T
Q  280 atgttgtatttagttttggtattcat 305  Q
    ||||||||||||| ||||||| ||||    
T  41206656 atgttgtatttagctttggtactcat 41206631  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 332
Target Start/End: Complemental strand, 15917403 - 15917251
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    |||||||||||||| ||  | ||||| ||||||||| | ||| |  |||| ||| |||||||||| || |||  ||||||||||||||| || | | |||    
T  15917403 aatgaacggaatgacagactatttaggaatagacaaagctctataccacatatgttagataaagtaaaatcatattctttgtggtggttgaaagctagta 15917304  T
Q  280 atgttgtatttagttttggtattcatcagtggtagtcgagtccgctttcatgt 332  Q
    ||||||| ||||||||||||| |||| | |||| |||||| ||||||| ||||    
T  15917303 atgttgtctttagttttggtactcataattggtggtcgagcccgcttttatgt 15917251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 17765352 - 17765477
Alignment:
Q  180 aatgaacggaatgataggatttttagaaatagacaatgttctttgtcacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgta 279  Q
    ||||| ||||||| ||| ||||||||||| |  ||  | |||||  ||||| || |||| ||||| || ||| ||||||||||| ||||||| | | |||    
T  17765352 aatgatcggaatgttagaatttttagaaacatgcagagctctttaccacaattgttagacaaagtaaaatcatcttctttgtgggggttaaaagctagta 17765451  T
Q  280 atgttgtatttagttttggtattcat 305  Q
    ||||||| ||||||||||||| ||||    
T  17765452 atgttgtttttagttttggtactcat 17765477  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 319
Target Start/End: Complemental strand, 28252425 - 28252332
Alignment:
Q  226 cacaaatgctagataaagtgaactcaacttctttgtggtggttaaaggtttgtaatgttgtatttagttttggtattcatcagtggtagtcgag 319  Q
    |||||||| |||| ||||| || ||| ||||||||||||||||||| | | ||||| |||| ||||| | ||||| |||| | |||| ||||||    
T  28252425 cacaaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagctagtaatattgtttttagctatggtactcataattggtggtcgag 28252332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 39449041 - 39449009
Alignment:
Q  17 agttatcaattaaaggttgttcaaataacactc 49  Q
    |||| ||||||||||||||||||||||||||||    
T  39449041 agttgtcaattaaaggttgttcaaataacactc 39449009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 43513559 - 43513591
Alignment:
Q  17 agttatcaattaaaggttgttcaaataacactc 49  Q
    |||| ||||||||||||||||||||||||||||    
T  43513559 agttgtcaattaaaggttgttcaaataacactc 43513591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 71970 - 71938
Alignment:
Q  17 agttatcaattaaaggttgttcaaataacactc 49  Q
    |||| ||||||||||||||||||||||||||||    
T  71970 agttgtcaattaaaggttgttcaaataacactc 71938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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