View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9721_low_5 (Length: 319)
Name: NF9721_low_5
Description: NF9721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9721_low_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 22 - 319
Target Start/End: Original strand, 34456588 - 34456883
Alignment:
| Q |
22 |
ttgttcatacattgtaaataactcatcttatcaatcaaacaagcttatttttgcaaatttatccttttatctttatattgttattcacgcattttttagt |
121 |
Q |
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| T |
34456588 |
ttgttcatacattgtaaataactcatcttatcaatcaaacaagctt--ttttgcaaatttatccttttatctttatattgttattcacgcattttttagt |
34456685 |
T |
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| Q |
122 |
gtagctgaaaacttgaaaacaattgtacctaatgttccacctgaaagttggggaacccacaactaagggacatgattctctcctcagtcgaccacaaccg |
221 |
Q |
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| T |
34456686 |
gtagctgaaaacttgaaaacaattgtacctaatattccacctgaaagttggggaacccacaactaagggacatgattctctcctcagtcgaccacaactg |
34456785 |
T |
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| Q |
222 |
atttaagcttccataaactcacacaattatttgtagctttcttgcacaacgtcaaacacttcttgagcttcaaagctagcgccttcattagggcacac |
319 |
Q |
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| T |
34456786 |
atttcagcttccataaactcacacaattatttgtagctttcttgcacaacgtcaaacacttcctgagcttcaaagctagcgccttcattagggcacac |
34456883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 8821727 - 8821684
Alignment:
| Q |
51 |
atcaatcaaacaagcttatttttgcaaatttatccttttatctt |
94 |
Q |
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| T |
8821727 |
atcaatcaaacaagcttatttttgcaaatttatccatttatctt |
8821684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 31294877 - 31295017
Alignment:
| Q |
15 |
aaatatgttgttcatacattgtaaataactcatcttatcaatcaaacaagcttatttttgcaaatttatccttttatctttatattgttattcacgcatt |
114 |
Q |
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|||||| || |||||||||| |||||||| ||| |||||||||||||||||||||| | |||||||| ||||||||| || | |||| | ||||| |
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| T |
31294877 |
aaatattttattcatacattttaaataacacatacaatcaatcaaacaagcttattttcac-aatttatctatttatctttctaattatatttatgcatt |
31294975 |
T |
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| Q |
115 |
ttttagtgtagct-gaaaacttgaaaacaattgtacctaatg |
155 |
Q |
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| T |
31294976 |
ttttagtgttgctcaaaaacctaaaaacaaatgtacctaatg |
31295017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 19121735 - 19121667
Alignment:
| Q |
15 |
aaatatgttgttcatacattgtaaataactcatcttatcaatcaaacaagcttatttttgcaaatttat |
83 |
Q |
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| T |
19121735 |
aaatattttgtgcatacattgtaattaacatatccaatcaatcaaacaagcttattttagcaaatttat |
19121667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 7665275 - 7665229
Alignment:
| Q |
51 |
atcaatcaaacaagcttatttttgcaaatttatccttttatctttat |
97 |
Q |
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| T |
7665275 |
atcaataaaacaagattatttttgcaaatttatccctttatctttat |
7665229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 25051613 - 25051569
Alignment:
| Q |
51 |
atcaatcaaacaagcttatttttgcaaatttatccttttatcttt |
95 |
Q |
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| T |
25051613 |
atcaataaaacaaacttatctttgcaaatttatccctttatcttt |
25051569 |
T |
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