View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9721_low_7 (Length: 291)
Name: NF9721_low_7
Description: NF9721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9721_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 275
Target Start/End: Complemental strand, 48217170 - 48216899
Alignment:
| Q |
6 |
aggtggtttatggttggtagatatttaatatttgtaacacttta----tttaaacttttcaatttttctatcaacaaattaagctgagttgtgttcttta |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48217170 |
aggtggtttatggttggtagatatttaatatttgtaacactttaattatttaaacttttcaatttttctatcaacaaattaagctgagttgtgttcttta |
48217071 |
T |
|
| Q |
102 |
gtagaattgtagataaatcatgaatggttcatcttgattttgttaagtcttttgtttatacatatatgtcataaagttacttaataattagattatcttt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48217070 |
gtagaattgtagataaatcatgaatggttcatcttgattttgttaagtcttttgtttatac--atatgtcataaagttacttaataattagattatcttt |
48216973 |
T |
|
| Q |
202 |
ctatttctttgacttgtgtaatctgtacctccagaataatcttatgatttcatagccataatttggttaaaaac |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48216972 |
ctatttctttgacttgtgtaatctgtacctccagaataatcttatgatttcatagccataatttggttaaaaac |
48216899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University