View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9722_high_3 (Length: 481)
Name: NF9722_high_3
Description: NF9722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9722_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 8452094 - 8452559
Alignment:
| Q |
1 |
caacagacaagacgtagaatggccttcagttatgtcgatgtaaattacttacaagaagaagcatttaagttatttcacacaaagcctgaattttagattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8452094 |
caacagacaagacgtagaatggccttcagttatgtcgatgtaaattacttacaagaagaagcatttaagttatttcacacaaagcctgaattttagattt |
8452193 |
T |
|
| Q |
101 |
caaactaccagatgtcttatagaaggctccatcttcaatgcccactgtattgctcgttcacacctttcttcaagatgtaatactgcaactcgctgcttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8452194 |
caaactaccagatgtcttatagaaggctccatcttcaatgcccactgtattgctcgttcacacctttcttcaagatgtaatactgcaactcgctgcttga |
8452293 |
T |
|
| Q |
201 |
catgtagaaaacagactaaataagacatatcaaaagacatgagttaaaggtaaacaatggcagggaaaagctaaacttcagtcgtaaaatttaaaggaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8452294 |
catgtagaaaacagactaaataagacatatcaaaggacatgagttaaaggtaaacaatagcagggaaaagctaaacttcagtcgtaaaatttaaaggaaa |
8452393 |
T |
|
| Q |
301 |
acatacaaaagtataactaacctgaaaagaagcggcaatatcagctcgtgacaatcgatcttcataacttgctgaagaaataggaattgttgcatcactg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8452394 |
gcatacaaaagtataactaacctgaaaagaagcggcaatatcagctcgtgacaatcgatcttcataacttgctgaagaaataggaattgttgcatcactg |
8452493 |
T |
|
| Q |
401 |
cgaatagcacatgtactcagaagtcataagtctgtacaacaaaattaaaagataattgcactattt |
466 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8452494 |
cgaatagcacatgtactcggaagtcataagtctgtacaacaaaattaaaagataattgcactattt |
8452559 |
T |
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