View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9722_low_1 (Length: 629)
Name: NF9722_low_1
Description: NF9722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9722_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 98 - 590
Target Start/End: Original strand, 4275066 - 4275562
Alignment:
| Q |
98 |
cttgatttctctgtaaggaatgagaaggcttttctcaagtttggaatccaaaccaaggattcgagatgcacgttggaaattacggttggtggcaacaaga |
197 |
Q |
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| T |
4275066 |
cttgatttctctgtaaggaatgagaaggcttttctcaagtttggaatccaaaccaaggattcgagatgcacgttggaaattacggttggtggcaacaaga |
4275165 |
T |
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| Q |
198 |
gcgttcatggctgttgctgaatgaaagtttgactcagtttagtgtatgtaacagtgatgatactcaaaccaaaatgaaactgaattcctagttttattga |
297 |
Q |
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| T |
4275166 |
gcattcatggctgttgctgaatgaaagtttgactcagtttagtgtatgtaacagtgatgatactcaaaccaaaatgaaactgaattcctagttttattga |
4275265 |
T |
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| Q |
298 |
ttgaaaaggttttacacacgtgaattcacaaacacggtattgattacgtaactgaggatatacttgtaataattgtactaaagaaattgtcaaggaaaat |
397 |
Q |
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| T |
4275266 |
ttgaaaaggttttacacacgtgaattcacaaacacggtattgattacgtaactgaggatatacttgtaataattgtactaaagaaattgtcaaggaaaat |
4275365 |
T |
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| Q |
398 |
gacacctcataagtaataagtaagtaaatacattttgagaaagtggttagaggtcagaaatagtgacatgatatgcaatatgtcataaattgatgaag-t |
496 |
Q |
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| T |
4275366 |
gacacctcataagtaataagtaagtaaatacattttgagaaagtagttagagatcagaaatagtgacatgatatgcaatatgtcataaattgatgaagtt |
4275465 |
T |
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| Q |
497 |
gtttataagggatagaaagacaatgaaatgtaagac---nnnnnnnnnnntgaaatgttaaatgagtgcaagagaaattgaggtgtctaaatattat |
590 |
Q |
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| T |
4275466 |
gtttataagggatagaaagacaatgaaatgtaagaccaaaaaaataaaaatgaaatgttaaatgagtgcaagagaaattgaggtgtctaaatattat |
4275562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 582 - 611
Target Start/End: Original strand, 4276318 - 4276347
Alignment:
| Q |
582 |
aaatattattgttgaattgttaactaattc |
611 |
Q |
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| T |
4276318 |
aaatattattgttgaattgttaactaattc |
4276347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 41209483 - 41209392
Alignment:
| Q |
99 |
ttgatttctctgtaaggaatgagaaggcttttctcaagtttggaatccaaaccaaggattcgagatgcacgttggaaattacggttggtggc |
190 |
Q |
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| T |
41209483 |
ttgatttctctaaatggaatgagaagactcttctcaagcttggaatctaaaccaaggatacgagatgcacgttgaaaattacggtttgtggc |
41209392 |
T |
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