View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9722_low_11 (Length: 238)

Name: NF9722_low_11
Description: NF9722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9722_low_11
NF9722_low_11
[»] chr1 (18 HSPs)
chr1 (18-60)||(32970586-32970628)
chr1 (18-60)||(6160478-6160520)
chr1 (18-60)||(7351693-7351735)
chr1 (17-58)||(27687297-27687338)
chr1 (18-60)||(35538700-35538742)
chr1 (15-60)||(2572522-2572567)
chr1 (18-59)||(8896352-8896393)
chr1 (18-57)||(9307684-9307723)
chr1 (17-60)||(31154184-31154227)
chr1 (18-60)||(7759272-7759314)
chr1 (18-60)||(12151233-12151275)
chr1 (18-60)||(26093451-26093493)
chr1 (18-60)||(31978671-31978713)
chr1 (18-60)||(17988577-17988621)
chr1 (18-55)||(24880933-24880970)
chr1 (20-60)||(24991672-24991712)
chr1 (18-58)||(34031548-34031588)
chr1 (16-60)||(35682824-35682868)
[»] chr7 (6 HSPs)
chr7 (18-60)||(2850904-2850946)
chr7 (1-60)||(7463258-7463319)
chr7 (18-60)||(34947564-34947606)
chr7 (18-60)||(35333107-35333149)
chr7 (18-60)||(44180269-44180311)
chr7 (18-59)||(32346076-32346117)
[»] chr6 (7 HSPs)
chr6 (18-60)||(1063618-1063660)
chr6 (18-60)||(13087587-13087629)
chr6 (24-60)||(16406801-16406837)
chr6 (18-60)||(1225104-1225146)
chr6 (18-55)||(28101379-28101416)
chr6 (18-50)||(6255627-6255659)
chr6 (18-58)||(34300052-34300092)
[»] chr5 (14 HSPs)
chr5 (18-60)||(4441078-4441120)
chr5 (18-60)||(11796181-11796223)
chr5 (18-60)||(8725023-8725065)
chr5 (18-60)||(27580657-27580699)
chr5 (18-60)||(32440198-32440240)
chr5 (18-59)||(6315792-6315833)
chr5 (20-60)||(31655112-31655152)
chr5 (18-60)||(1248618-1248660)
chr5 (18-60)||(9515803-9515845)
chr5 (18-60)||(29374399-29374441)
chr5 (18-60)||(37184093-37184135)
chr5 (27-60)||(3076656-3076689)
chr5 (18-59)||(27542852-27542893)
chr5 (29-61)||(29856115-29856147)
[»] chr3 (15 HSPs)
chr3 (18-60)||(24569116-24569158)
chr3 (18-60)||(51837975-51838017)
chr3 (18-60)||(37695682-37695724)
chr3 (18-65)||(44301619-44301666)
chr3 (18-60)||(1778699-1778741)
chr3 (18-60)||(3901165-3901207)
chr3 (18-60)||(5322953-5322995)
chr3 (18-60)||(14194612-14194654)
chr3 (18-60)||(24245110-24245152)
chr3 (18-60)||(28690798-28690840)
chr3 (18-60)||(30190676-30190718)
chr3 (18-60)||(30711130-30711172)
chr3 (18-60)||(49830186-49830228)
chr3 (18-60)||(54477475-54477517)
chr3 (18-59)||(36476641-36476682)
[»] chr2 (10 HSPs)
chr2 (18-60)||(39691547-39691589)
chr2 (18-60)||(8947066-8947108)
chr2 (18-60)||(19937734-19937776)
chr2 (18-60)||(43410483-43410525)
chr2 (18-59)||(45235638-45235679)
chr2 (18-58)||(14523388-14523428)
chr2 (1-57)||(43730653-43730709)
chr2 (18-60)||(15359101-15359143)
chr2 (18-59)||(37322485-37322526)
chr2 (17-57)||(43730486-43730526)
[»] scaffold0583 (1 HSPs)
scaffold0583 (18-60)||(2082-2124)
[»] chr8 (10 HSPs)
chr8 (18-60)||(7703173-7703215)
chr8 (18-58)||(36006906-36006946)
chr8 (19-58)||(5356657-5356696)
chr8 (18-60)||(7172971-7173013)
chr8 (18-60)||(31331465-31331507)
chr8 (18-60)||(41092051-41092093)
chr8 (18-55)||(32476344-32476381)
chr8 (18-58)||(4428370-4428410)
chr8 (24-60)||(9549988-9550024)
chr8 (20-60)||(39405821-39405861)
[»] chr4 (14 HSPs)
chr4 (17-55)||(8324337-8324375)
chr4 (18-60)||(49747018-49747060)
chr4 (18-59)||(28500914-28500955)
chr4 (20-60)||(16821353-16821393)
chr4 (18-58)||(49428366-49428406)
chr4 (18-57)||(42616928-42616967)
chr4 (18-60)||(462015-462057)
chr4 (18-60)||(8175602-8175644)
chr4 (18-60)||(35251946-35251988)
chr4 (18-60)||(36985843-36985885)
chr4 (18-60)||(42517660-42517702)
chr4 (18-60)||(46396905-46396947)
chr4 (18-60)||(50264102-50264144)
chr4 (20-60)||(7061686-7061726)
[»] scaffold1809 (1 HSPs)
scaffold1809 (18-60)||(700-742)
[»] scaffold0302 (1 HSPs)
scaffold0302 (18-60)||(16155-16197)
[»] scaffold0188 (1 HSPs)
scaffold0188 (18-60)||(6794-6836)
[»] scaffold0095 (1 HSPs)
scaffold0095 (20-60)||(50263-50303)


Alignment Details
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 32970628 - 32970586
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  32970628 tttagtaaataatattaattttatcattgaaatcaacacaatt 32970586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 6160520 - 6160478
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  6160520 tttagtaaataatactaattttatcattgaaatcaacacaatt 6160478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 7351693 - 7351735
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  7351693 tttagtaaataatattaattttatcattaaaatcaacacaatt 7351735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 27687297 - 27687338
Alignment:
Q  17 atttagtaaataatattaattttatcattgaaatcaacacaa 58  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  27687297 atttagtaaataatattaattttaccattgaaatcaacacaa 27687338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 35538700 - 35538742
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||||||||  ||||||||||||||||||||||||||    
T  35538700 tttagtaaataatatccattttatcattgaaatcaacacaatt 35538742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 2572522 - 2572567
Alignment:
Q  15 gtatttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    ||||||||||||| |||||||||||| |||||||||||| ||||||    
T  2572522 gtatttagtaaatgatattaattttaccattgaaatcaatacaatt 2572567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 8896393 - 8896352
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaat 59  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  8896393 tttagtaaatgatattaattttaccattgaaatcaacacaat 8896352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 9307684 - 9307723
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacaca 57  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  9307684 tttagtaaatgctattaattttatcattgaaatcaacaca 9307723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 31154184 - 31154227
Alignment:
Q  17 atttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||| |||||| ||||||||||||| ||||||||||||||    
T  31154184 atttagtagataatactaattttatcattaaaatcaacacaatt 31154227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 7759272 - 7759314
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| |||||||||| | |||||||||||||||||||    
T  7759272 tttagtaaatgatattaatttcaccattgaaatcaacacaatt 7759314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 12151233 - 12151275
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| ||| ||||||||||||||||||||||| ||||    
T  12151233 tttagtaaatgatactaattttatcattgaaatcaacataatt 12151275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 26093451 - 26093493
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||| ||||| |||||||||||| |||||||||||||||||||    
T  26093451 tttaataaatgatattaattttaccattgaaatcaacacaatt 26093493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 31978713 - 31978671
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||| | |||||||||||| |||||||||||||||||||    
T  31978713 tttagtaagtgatattaattttaccattgaaatcaacacaatt 31978671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 17988621 - 17988577
Alignment:
Q  18 tttagtaaataatat--taattttatcattgaaatcaacacaatt 60  Q
    |||||||||||||||  |||||||| |||||||||||||||||||    
T  17988621 tttagtaaataatatactaattttaacattgaaatcaacacaatt 17988577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 24880933 - 24880970
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaaca 55  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  24880933 tttagtaaatgatattaattttaccattgaaatcaaca 24880970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 24991712 - 24991672
Alignment:
Q  20 tagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    ||||||||| ||||||||||| | |||||||||||||||||    
T  24991712 tagtaaatactattaattttaccgttgaaatcaacacaatt 24991672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 34031588 - 34031548
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaa 58  Q
    |||||||||| |||||||||||| ||||| |||||||||||    
T  34031588 tttagtaaatgatattaattttaccattggaatcaacacaa 34031548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 35682868 - 35682824
Alignment:
Q  16 tatttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||| ||||| ||| |||| |||||||||||||||||||||||    
T  35682868 tatttaataaatgatactaatgttatcattgaaatcaacacaatt 35682824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 2850946 - 2850904
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  2850946 tttagtaaataatattaattttatcattgaaatcaacataatt 2850904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 7463258 - 7463319
Alignment:
Q  1 ctacaattaatg-gggtattta-gtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||||| ||||||||| ||||||  || ||||||||||||||||||||||||||||    
T  7463258 ctacaattaatgagggtatttaagtaaatgctactaattttatcattgaaatcaacacaatt 7463319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 34947564 - 34947606
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| ||| |||||||| |||||||||||||||||||    
T  34947564 tttagtaaatgataataattttaccattgaaatcaacacaatt 34947606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 35333107 - 35333149
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||| ||||||||||||||| ||| ||||||||||||||||||    
T  35333107 tttaataaataatattaattatataattgaaatcaacacaatt 35333149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 44180269 - 44180311
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| ||| |||||||| |||||||||||||||||||    
T  44180269 tttagtaaattatactaattttaccattgaaatcaacacaatt 44180311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 32346117 - 32346076
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaat 59  Q
    ||||||| || |||||||||||| ||||||||||||||||||    
T  32346117 tttagtagatgatattaattttaccattgaaatcaacacaat 32346076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 1063660 - 1063618
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  1063660 tttagtaaataatactaattttatcattgaaatcaacacaatt 1063618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 13087587 - 13087629
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| |||||||||||| |||||||||||||||||||    
T  13087587 tttagtaaatgatattaattttaccattgaaatcaacacaatt 13087629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 16406837 - 16406801
Alignment:
Q  24 aaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||| ||||||||||||||||||||||||||||    
T  16406837 aaataatactaattttatcattgaaatcaacacaatt 16406801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 1225104 - 1225146
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||||||||||||||||  ||| ||||||||||||||    
T  1225104 tttagtaaataatattaattttactatttaaatcaacacaatt 1225146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 28101416 - 28101379
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaaca 55  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  28101416 tttagtaaatgatactaattttatcattgaaatcaaca 28101379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 6255659 - 6255627
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaat 50  Q
    |||||||||| ||||||||||||||||||||||    
T  6255659 tttagtaaatgatattaattttatcattgaaat 6255627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 34300052 - 34300092
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaa 58  Q
    |||||||||||||| ||||||||||||| ||||||| ||||    
T  34300052 tttagtaaataatactaattttatcattcaaatcaaaacaa 34300092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 4441078 - 4441120
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  4441078 tttagtaaataatattaattttatcattaaaatcaacacaatt 4441120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 11796223 - 11796181
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  11796223 tttagtaaataatattaattttatcattaaaatcaacacaatt 11796181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 8725065 - 8725023
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| |||||||||||| |||||||||||||||||||    
T  8725065 tttagtaaatgatattaattttaccattgaaatcaacacaatt 8725023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 27580657 - 27580699
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| |||||||||||| |||||||||||||||||||    
T  27580657 tttagtaaatgatattaattttaccattgaaatcaacacaatt 27580699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 32440198 - 32440240
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| |||||||||||||||||||||| |||||||||    
T  32440198 tttagtaaatgatattaattttatcattgaaattaacacaatt 32440240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 6315833 - 6315792
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaat 59  Q
    |||||||||| |||||||||||||||||||||| ||||||||    
T  6315833 tttagtaaatgatattaattttatcattgaaattaacacaat 6315792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 31655112 - 31655152
Alignment:
Q  20 tagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  31655112 tagtaaatgatattaattttaccattgaaatcaacacaatt 31655152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 1248660 - 1248618
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| |||||||||||| |||||||||||||| ||||    
T  1248660 tttagtaaatgatattaattttaccattgaaatcaacataatt 1248618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 9515803 - 9515845
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| ||| |||||||| |||||||||||||||||||    
T  9515803 tttagtaaatgatactaattttaccattgaaatcaacacaatt 9515845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 29374399 - 29374441
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    ||||||||||  |||||||||||||||||||||||||| ||||    
T  29374399 tttagtaaatgctattaattttatcattgaaatcaacataatt 29374441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 37184135 - 37184093
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| |||||||||||| ||||||||||||| |||||    
T  37184135 tttagtaaatgatattaattttaccattgaaatcaactcaatt 37184093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 3076656 - 3076689
Alignment:
Q  27 taatattaattttatcattgaaatcaacacaatt 60  Q
    ||||| ||||||||||||||||||||||||||||    
T  3076656 taatactaattttatcattgaaatcaacacaatt 3076689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 27542852 - 27542893
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaat 59  Q
    ||||||||||  ||||||||||| ||||||||||||||||||    
T  27542852 tttagtaaatggtattaattttaccattgaaatcaacacaat 27542893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 29856115 - 29856147
Alignment:
Q  29 atattaattttatcattgaaatcaacacaattt 61  Q
    |||||||||||||||||||||||||| ||||||    
T  29856115 atattaattttatcattgaaatcaacgcaattt 29856147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 24569158 - 24569116
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  24569158 tttagtaaataatattaattttaccattgaaatcaacacaatt 24569116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 51838017 - 51837975
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  51838017 tttagtaaatgatattaattttatcattgaaatcaacacaatt 51837975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 37695724 - 37695682
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| |||||||||||| |||||||||||||||||||    
T  37695724 tttagtaaatgatattaattttaccattgaaatcaacacaatt 37695682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 44301619 - 44301666
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatttaata 65  Q
    |||||||||| ||| ||||||||||||||||||||||| |||| ||||    
T  44301619 tttagtaaatgatactaattttatcattgaaatcaacataattaaata 44301666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 1778699 - 1778741
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    ||||||||||   ||||||||||||||||||||||||||||||    
T  1778699 tttagtaaatgtcattaattttatcattgaaatcaacacaatt 1778741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 3901207 - 3901165
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  3901207 tttagtaaatgatattaattttatcattgaaattaatacaatt 3901165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 5322995 - 5322953
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| ||||||||||||||| ||||||||||| ||||    
T  5322995 tttagtaaatgatattaattttatcactgaaatcaacataatt 5322953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 14194612 - 14194654
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    ||||||||||  || ||||||||||||||||||||||||||||    
T  14194612 tttagtaaatggtactaattttatcattgaaatcaacacaatt 14194654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 24245152 - 24245110
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||||||| ||||||||| ||||||||||||| ||||    
T  24245152 tttagtaaataatactaattttattattgaaatcaacataatt 24245110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 28690840 - 28690798
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| |||||||||||| | |||||||||||||||||    
T  28690840 tttagtaaatgatattaattttaccgttgaaatcaacacaatt 28690798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 30190718 - 30190676
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| ||| |||||||| |||||||||||||||||||    
T  30190718 tttagtaaatgatactaattttaccattgaaatcaacacaatt 30190676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 30711130 - 30711172
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| ||||||||||||||||| ||||||||| ||||    
T  30711130 tttagtaaatgatattaattttatcattaaaatcaacataatt 30711172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 49830186 - 49830228
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| ||||||||||||  ||||||||||||||||||    
T  49830186 tttagtaaatgatattaattttactattgaaatcaacacaatt 49830228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 54477517 - 54477475
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| |||||||||||| |||| ||||||||||||||    
T  54477517 tttagtaaatgatattaattttaccattaaaatcaacacaatt 54477475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 36476641 - 36476682
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaat 59  Q
    |||||||||| |||||||||||| ||||| ||||||||||||    
T  36476641 tttagtaaatgatattaattttaccattgcaatcaacacaat 36476682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 39691547 - 39691589
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  39691547 tttagtaaatgatattaattttatcattgaaatcaacacaatt 39691589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 8947108 - 8947066
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  8947108 tttagtaaatattactaattttatcattgaaatcaacacaatt 8947066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 19937734 - 19937776
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| |||||||||||| |||||||||||||||||||    
T  19937734 tttagtaaatgatattaattttaccattgaaatcaacacaatt 19937776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 43410483 - 43410525
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| ||||||||||||||||||| ||||||||||||    
T  43410483 tttagtaaatgatattaattttatcattgatatcaacacaatt 43410525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 45235638 - 45235679
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaat 59  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  45235638 tttagtaaatgatattaattttaccattgaaatcaacacaat 45235679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 14523428 - 14523388
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaa 58  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  14523428 tttagtaaatgatattaattttaccattgaaatcaacacaa 14523388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 43730653 - 43730709
Alignment:
Q  1 ctacaattaatggggtatttagtaaataatattaattttatcattgaaatcaacaca 57  Q
    |||||||||||  ||| |||||||||| |||||||||||| |||| |||||||||||    
T  43730653 ctacaattaataaggtttttagtaaatgatattaattttaccattaaaatcaacaca 43730709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 15359143 - 15359101
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| ||||||||||||||||  ||||||||||||||    
T  15359143 tttagtaaatgatattaattttatcatcaaaatcaacacaatt 15359101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 37322485 - 37322526
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaat 59  Q
    |||| ||||| |||||||||||| ||||||||||||||||||    
T  37322485 tttaataaatgatattaattttaccattgaaatcaacacaat 37322526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 43730486 - 43730526
Alignment:
Q  17 atttagtaaataatattaattttatcattgaaatcaacaca 57  Q
    ||||||||||| |||||||||||| |||| |||||||||||    
T  43730486 atttagtaaatgatattaattttaccattaaaatcaacaca 43730526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0583 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 2082 - 2124
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| |||||||||||||||||||||| |||||||||    
T  2082 tttagtaaatgatattaattttatcattgaaattaacacaatt 2124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 7703215 - 7703173
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| |||||||||||| |||||||||||||||||||    
T  7703215 tttagtaaatgatattaattttaccattgaaatcaacacaatt 7703173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 36006946 - 36006906
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaa 58  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  36006946 tttagtcaataatattaattttatcattaaaatcaacacaa 36006906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 5356657 - 5356696
Alignment:
Q  19 ttagtaaataatattaattttatcattgaaatcaacacaa 58  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  5356657 ttagtaaatgatattaattttatcattaaaatcaacacaa 5356696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 7172971 - 7173013
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    ||||||||||  || ||||||||||||||||||||||||||||    
T  7172971 tttagtaaatgctactaattttatcattgaaatcaacacaatt 7173013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 31331465 - 31331507
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||    
T  31331465 tttagtaaataataataattttataattgaaatcaatacaatt 31331507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 41092051 - 41092093
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||| ||||| |||||||||||| |||||||||||||||||||    
T  41092051 tttaataaatgatattaattttaccattgaaatcaacacaatt 41092093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 32476344 - 32476381
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaaca 55  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  32476344 tttaataaatgatattaattttatcattgaaatcaaca 32476381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 4428410 - 4428370
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaa 58  Q
    |||||||||| ||| ||||||||||||| ||||||||||||    
T  4428410 tttagtaaatgataataattttatcattaaaatcaacacaa 4428370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 9549988 - 9550024
Alignment:
Q  24 aaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  9549988 aaataatatttattttatcattaaaatcaacacaatt 9550024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 39405821 - 39405861
Alignment:
Q  20 tagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||| ||| |||||||||||||||||| |||||||||    
T  39405821 tagtaaatgatactaattttatcattgaaattaacacaatt 39405861  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 8324337 - 8324375
Alignment:
Q  17 atttagtaaataatattaattttatcattgaaatcaaca 55  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  8324337 atttagtaaataatattaattttatcattaaaatcaaca 8324375  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 49747018 - 49747060
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  49747018 tttagtaaatactactaattttatcattgaaatcaacacaatt 49747060  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 28500955 - 28500914
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaat 59  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  28500955 tttagtaaatgatattaattttaccattgaaatcaacacaat 28500914  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 16821393 - 16821353
Alignment:
Q  20 tagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||| ||| ||||||||||||||||||||||||||||    
T  16821393 tagtaaatgatactaattttatcattgaaatcaacacaatt 16821353  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 49428406 - 49428366
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaa 58  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  49428406 tttagtaaattatattaattttaccattgaaatcaacacaa 49428366  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 42616967 - 42616928
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacaca 57  Q
    |||||||||| |||||||||||| ||||||||||||||||    
T  42616967 tttagtaaatgatattaattttaccattgaaatcaacaca 42616928  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 462015 - 462057
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    ||||||||||||||||| ||||| |||||||||||| ||||||    
T  462015 tttagtaaataatattacttttaccattgaaatcaatacaatt 462057  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 8175644 - 8175602
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||| ||||| |||||||||||| |||||||||||||||||||    
T  8175644 tttaataaatgatattaattttaccattgaaatcaacacaatt 8175602  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 35251946 - 35251988
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| |||||||||||||||||||||| | |||||||    
T  35251946 tttagtaaatgatattaattttatcattgaaataaccacaatt 35251988  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 36985843 - 36985885
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| ||| |||||||| |||||||||||||||||||    
T  36985843 tttagtaaatgatactaattttaccattgaaatcaacacaatt 36985885  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 42517702 - 42517660
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| || ||||||||| |||||||||||||||||||    
T  42517702 tttagtaaatgatcttaattttaccattgaaatcaacacaatt 42517660  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 46396947 - 46396905
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    ||||||||||  ||||||||||| |||||||||||||||||||    
T  46396947 tttagtaaatgctattaattttaccattgaaatcaacacaatt 46396905  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 50264144 - 50264102
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||| || ||||||||| |||||||||||||||||||    
T  50264144 tttagtaaatgatgttaattttaacattgaaatcaacacaatt 50264102  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 7061726 - 7061686
Alignment:
Q  20 tagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||| ||| |||||||| |||||||||||||||||||    
T  7061726 tagtaaatgatactaattttaccattgaaatcaacacaatt 7061686  T

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Target: scaffold1809 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 742 - 700
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    ||||||||||  ||||||||||| |||||||||||||||||||    
T  742 tttagtaaatgctattaattttaccattgaaatcaacacaatt 700  T

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Target: scaffold0302 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 16155 - 16197
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    ||||||||||  |||||||||||||||| ||||||||||||||    
T  16155 tttagtaaatgctattaattttatcattaaaatcaacacaatt 16197  T

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Target: scaffold0188 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 6794 - 6836
Alignment:
Q  18 tttagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||||||||| |||||||||||||||||| || ||||||    
T  6794 tttagtaaataatactaattttatcattgaaattaaaacaatt 6836  T

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Target: scaffold0095 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 50263 - 50303
Alignment:
Q  20 tagtaaataatattaattttatcattgaaatcaacacaatt 60  Q
    |||||||| ||| |||||||||||||||||| |||||||||    
T  50263 tagtaaatgatactaattttatcattgaaattaacacaatt 50303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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