View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9722_low_12 (Length: 228)
Name: NF9722_low_12
Description: NF9722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9722_low_12 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 65 - 228
Target Start/End: Original strand, 14462144 - 14462306
Alignment:
| Q |
65 |
tatatatatttatcaaaatctttcttttatattgtgaggtcttttgtttgcctggcggatctaaattatgtatttaatttgtgaaacctttgnnnnnnna |
164 |
Q |
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| T |
14462144 |
tatatatatgtatcaaaatctttcttttatattgtgaggtcttttgtttgcctggcggatctaacttatgtatttaatttgtgaaacctttg-tttctta |
14462242 |
T |
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| Q |
165 |
taactattatcatatagattatttaattattccagtccataaatatcactcttttgttgttgtt |
228 |
Q |
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| T |
14462243 |
taactattatcatatagattatttatttattccagtccataaatatcactcttttgttgttgtt |
14462306 |
T |
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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 14461990 - 14462052
Alignment:
| Q |
1 |
gaaaaacaagatctacaagccaacaagcttgacaaatttgttgaagtcctttatcttatattt |
63 |
Q |
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| T |
14461990 |
gaaaaacaagatctacaagccaacaagcttgacaaatttgttgaagtcctttatcttatattt |
14462052 |
T |
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