View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9722_low_4 (Length: 415)
Name: NF9722_low_4
Description: NF9722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9722_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 5 - 386
Target Start/End: Complemental strand, 29353564 - 29353184
Alignment:
| Q |
5 |
agtttggtggtagtattagttttctcaaccatccaatcactattataacaataaaattaaggaagatattttttgtctctaagaatgttgattaattttt |
104 |
Q |
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| T |
29353564 |
agtttagtggtagtattaattttctcaactatccaatcactattataacaataaaattaagaaagatattttttgtctccaagaatgttgattaattttt |
29353465 |
T |
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| Q |
105 |
tgctaaaatctagtgtcgactcacttttttgattcctagttgagaggataatccannnnnnnataagcaaaaatcacattaatatatagaaatgcacttg |
204 |
Q |
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| T |
29353464 |
tgctaaaatctagtgtcgactcacttttttgattcatagttgagaggttaatccatttttttataagcaaaaatcacattaatatatagaaatgcacttg |
29353365 |
T |
|
| Q |
205 |
agtgtcaaatgtaaaatcccctcctaacatattttttaaaaaatttgatacaagagaaattattattattaattaaaatggcacatctaactaccatttt |
304 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29353364 |
agtgtcaaatgtaaaatcccctcctaatatattttttaaaaattttgatacaagagaaattattattattaattaaaatggcacatctaaccaccatttt |
29353265 |
T |
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| Q |
305 |
acaaatgtcgtgttttagattaaatttgaacttctgtcacgatgcttatgtttgaggctacaaagtcaaatgcatgaacaaa |
386 |
Q |
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||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29353264 |
acaaatgtcgtcttttagatgaaatttgaactt-tgtcacgatgcttatgtttgaggttacaaagtcaaatgcatgaacaaa |
29353184 |
T |
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