View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9722_low_5 (Length: 379)
Name: NF9722_low_5
Description: NF9722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9722_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 3 - 366
Target Start/End: Complemental strand, 11548284 - 11547925
Alignment:
| Q |
3 |
agtttggagttgacttcggattatgaaatcttaggattttacgtgggggataaagtagattcgtttggtgattggtatgcaatgaatttgacagattaga |
102 |
Q |
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| T |
11548284 |
agtttgtagttgacttcggattatgaaatcttaggattttacgtgggggataaagtagtttcgtttggtaattggtatgcaatgaatttgacaaattaga |
11548185 |
T |
|
| Q |
103 |
ttcaagataaagtttcttagttgaattcatatcatgagtgtatgaaattttcgagttttacactacggaattacattggtttaagttgagtaatgatatt |
202 |
Q |
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| T |
11548184 |
ttcaagataaagtttcttagt---------atcatgggtgtatgaaatttttgagttttacactacggaattacattggtttaagttgagtaatgatatt |
11548094 |
T |
|
| Q |
203 |
tgtacaattattttataacaannnnnnnnnn-----attgtataagagagatttatccaaaaattatcgtataaatattgtatctctaattattgtacaa |
297 |
Q |
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|||||||||||||||| |||| ||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11548093 |
tgtacaattattttatgacaactttattttttttttattgtatgagagagaattatccaaaaatgatcgtataaatattgtatctctaattattgtacaa |
11547994 |
T |
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| Q |
298 |
atatttttgtgtggtttgcgttaaatatgagtgtactgattttcctccgttttgccaatagttgttggt |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11547993 |
atatttttgtgtggtttgcgttaaatatgagtgtactgattttcctccgttttgccaatagttgttggt |
11547925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 218
Target Start/End: Complemental strand, 3924198 - 3924168
Alignment:
| Q |
188 |
ttgagtaatgatatttgtacaattattttat |
218 |
Q |
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| T |
3924198 |
ttgagtaatgatatttgtacaattattttat |
3924168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 223
Target Start/End: Complemental strand, 12306201 - 12306172
Alignment:
| Q |
194 |
aatgatatttgtacaattattttataacaa |
223 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
12306201 |
aatgatatttgtacaattattttataacaa |
12306172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 218
Target Start/End: Complemental strand, 25489989 - 25489961
Alignment:
| Q |
190 |
gagtaatgatatttgtacaattattttat |
218 |
Q |
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| T |
25489989 |
gagtaatgatatttgtacaattattttat |
25489961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 222
Target Start/End: Complemental strand, 51231089 - 51231061
Alignment:
| Q |
194 |
aatgatatttgtacaattattttataaca |
222 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
51231089 |
aatgatatttgtacaattattttataaca |
51231061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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