View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9722_low_7 (Length: 290)
Name: NF9722_low_7
Description: NF9722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9722_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 18305336 - 18305608
Alignment:
| Q |
1 |
taaactctctgttgctctaaacatgtaccaagagtcatgttaaattataccggtaattatattcgaactgtgtaaccgaaatgaatttttacgctctctt |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18305336 |
taaactctctgttgctctaaac------caagagtcatgttaaattataccggtaattatattcgaactgtgtaaccgaaatgaatttttacgctctctt |
18305429 |
T |
|
| Q |
101 |
ataataagtatattcaccttgatcgttccagaaaacatgaatttgaaaatagagaagaaaaaattcagatatatactaattgtgtggtaagcataatatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18305430 |
ataataagtatattcaccttgatcgttccagaaaacatgaatttgaaaataaagaagaaataattcagatatatactaattgtgtggtaagcataatatg |
18305529 |
T |
|
| Q |
201 |
accaaccctcgtagtgatgtgctctgcaagggtcaatgcgctttaggttaaattgttccccatacacgccccgcccttt |
279 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18305530 |
accaaccctcgtagtgatgtgctctgcaagggtcaatgcgctttaggttaaattgttccccatacacgccccgcccttt |
18305608 |
T |
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