View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9722_low_9 (Length: 243)
Name: NF9722_low_9
Description: NF9722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9722_low_9 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 14462517 - 14462301
Alignment:
| Q |
18 |
acttcaaacatatacattatggtatgaaaataaagaaaatggaaacatttcaaatgcaaaatccaaaatctaatgagaaggcaaccaaataagacgacta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14462517 |
acttcaaacatatacattatggtatgaaaataaagaaaatggaaacatttcaaatgcaaaatccaaaatctaatgagaaggcaaccaaataaa--gacta |
14462420 |
T |
|
| Q |
118 |
tatatatgacaaacacacgtagagaataaattaaaccaatcacaaccgggagacaagattaacatgttgatatcatatcatatcatatatagaaaacaac |
217 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14462419 |
tatatatgacagacacacgtagagaataaattaaaccaatcacaaccgggagacaagattaacatgttgatatcatatcatat-------agaaaacaac |
14462327 |
T |
|
| Q |
218 |
aataagcaaatacacatactaacaac |
243 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
14462326 |
aataagcaaatacacatactaacaac |
14462301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University