View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9723_high_21 (Length: 230)
Name: NF9723_high_21
Description: NF9723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9723_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 29319691 - 29319891
Alignment:
| Q |
13 |
agcacagagcaccagtttgggtaaactgctcttatcaaacacaaggactttaagtgcttccatcgttgtatcgtaatagttttggcgaaaatttccctgc |
112 |
Q |
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| T |
29319691 |
agcacagagcaccagtttgggtaaactgctcttatcaaacacaaggactttaagtgcttccatcgttgtatcgtaatagttttggcgaaaatttccctgc |
29319790 |
T |
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| Q |
113 |
atgaaacaattatacatcaaatcacatgaggataattatttaccataataaaaacctacatcattcctagatttcagatgt-taatgtataccggcatta |
211 |
Q |
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| T |
29319791 |
atgaaacaattatacatcaaatcacatgaggataattatttaccataataaaaacctacatcattcctagatttcagatgtataatgtataccggcatta |
29319890 |
T |
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| Q |
212 |
a |
212 |
Q |
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| T |
29319891 |
a |
29319891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 196
Target Start/End: Original strand, 29330789 - 29330918
Alignment:
| Q |
67 |
tgcttccatcgttgtatcgtaatagttttggcgaaaatttccctgcatgaaacaattatacatcaaatcacatgaggataattatttaccataataaaaa |
166 |
Q |
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| T |
29330789 |
tgcttccattgttgtatcgtaatgattttggcgaaaaatttcctgcatgcaacaattagacatcaaatcacattagaataattatttactgtgatcaaaa |
29330888 |
T |
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| Q |
167 |
cctacatcattcctagatttcagatgttaa |
196 |
Q |
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| T |
29330889 |
cctatgtcattcctggacttcagatattaa |
29330918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 29302096 - 29302174
Alignment:
| Q |
46 |
atcaaacacaaggactttaagtgcttccatcgttgtatcgtaatagttttggcgaaaatttccctgcatgaaacaatta |
124 |
Q |
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||||||||||| |||||| |||||||||| |||||| |||||||| |||||||||||| || |||||||| |||||||| |
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| T |
29302096 |
atcaaacacaatgactttcagtgcttccaccgttgtttcgtaataattttggcgaaaagtttcctgcatgcaacaatta |
29302174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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