View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9723_high_25 (Length: 208)

Name: NF9723_high_25
Description: NF9723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9723_high_25
NF9723_high_25
[»] chr7 (1 HSPs)
chr7 (24-189)||(21477373-21477538)
[»] chr4 (12 HSPs)
chr4 (111-177)||(27478969-27479036)
chr4 (111-177)||(27486029-27486096)
chr4 (140-177)||(27508839-27508876)
chr4 (114-177)||(27506685-27506749)
chr4 (111-165)||(27513862-27513917)
chr4 (145-187)||(27489937-27489979)
chr4 (140-177)||(27524511-27524548)
chr4 (145-177)||(27468448-27468480)
chr4 (145-177)||(27475700-27475732)
chr4 (149-177)||(27497447-27497475)
chr4 (114-165)||(27501316-27501368)
chr4 (145-177)||(27514878-27514910)
[»] chr5 (2 HSPs)
chr5 (111-177)||(1754675-1754742)
chr5 (111-177)||(1756843-1756910)
[»] chr8 (2 HSPs)
chr8 (141-174)||(21608247-21608280)
chr8 (39-88)||(33319520-33319569)
[»] chr3 (2 HSPs)
chr3 (141-174)||(38032272-38032305)
chr3 (141-174)||(50913486-50913519)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 24 - 189
Target Start/End: Original strand, 21477373 - 21477538
Alignment:
Q  24 aattgtgcttcagacgcttgttatgttatggttaatagaactttttgatgcttaatcaataggaaacaaattctctagatgcctgttttcaagtatgata 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21477373 aattgtgcttcagacgcttgttatgttatggttaatagaactttttgatgcttaatcaataggaaacaaattctctagatgcctgttttcaagtatgata 21477472  T
Q  124 ttgggatacaaacggtgtcattttctctccaacatacactgcaacatagcccttccttatttctct 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21477473 ttgggatacaaacggtgtcattttctctccaacatacactgcaacatagcccttccttatttctct 21477538  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 27478969 - 27479036
Alignment:
Q  111 ttcaagtatgatattgggata-caaacggtgtcattttctctccaacatacactgcaacatagccctt 177  Q
    ||||||||||||||||||| | ||||| |  ||  |||||||||||||||||||||||||||||||||    
T  27478969 ttcaagtatgatattgggacaacaaaccgcttctgtttctctccaacatacactgcaacatagccctt 27479036  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 27486029 - 27486096
Alignment:
Q  111 ttcaagtatgatattgggata-caaacggtgtcattttctctccaacatacactgcaacatagccctt 177  Q
    ||||||||||||||||||| | ||||| |  ||  |||||||||||||||||||||||||||||||||    
T  27486029 ttcaagtatgatattgggacaacaaaccgcttctgtttctctccaacatacactgcaacatagccctt 27486096  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 27508876 - 27508839
Alignment:
Q  140 gtcattttctctccaacatacactgcaacatagccctt 177  Q
    |||| |||||||||||||||||||||||||||||||||    
T  27508876 gtcagtttctctccaacatacactgcaacatagccctt 27508839  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 27506749 - 27506685
Alignment:
Q  114 aagtatgatattgggat-acaaacggtgtcattttctctccaacatacactgcaacatagccctt 177  Q
    ||||||||||||||||| |||||| | |||  ||||||||| ||||| |||||||||||||||||    
T  27506749 aagtatgatattgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctt 27506685  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 27513862 - 27513917
Alignment:
Q  111 ttcaagtatgatattgggat-acaaacggtgtcattttctctccaacatacactgc 165  Q
    |||||||||||||||||||| |||||| |  ||||||||||||| |||||||||||    
T  27513862 ttcaagtatgatattgggatcacaaaccgcttcattttctctcctacatacactgc 27513917  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 27489979 - 27489937
Alignment:
Q  145 tttctctccaacatacactgcaacatagcccttccttatttct 187  Q
    ||||||||||||||||||| ||||||||||||| |||| ||||    
T  27489979 tttctctccaacatacactacaacatagccctttcttacttct 27489937  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 27524548 - 27524511
Alignment:
Q  140 gtcattttctctccaacatacactgcaacatagccctt 177  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  27524548 gtcagtttctctccaacatacactgcaacgtagccctt 27524511  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 27468448 - 27468480
Alignment:
Q  145 tttctctccaacatacactgcaacatagccctt 177  Q
    |||||||||||||||||| ||||||||||||||    
T  27468448 tttctctccaacatacaccgcaacatagccctt 27468480  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 27475700 - 27475732
Alignment:
Q  145 tttctctccaacatacactgcaacatagccctt 177  Q
    |||||||||||||||||| ||||||||||||||    
T  27475700 tttctctccaacatacacggcaacatagccctt 27475732  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 177
Target Start/End: Original strand, 27497447 - 27497475
Alignment:
Q  149 tctccaacatacactgcaacatagccctt 177  Q
    |||||||||||||||||||||||||||||    
T  27497447 tctccaacatacactgcaacatagccctt 27497475  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 27501368 - 27501316
Alignment:
Q  114 aagtatgatattgggat-acaaacggtgtcattttctctccaacatacactgc 165  Q
    ||||||||||||||||| |||||| || |||||| |||||||||||| |||||    
T  27501368 aagtatgatattgggatcacaaaccgtttcatttcctctccaacatatactgc 27501316  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 27514910 - 27514878
Alignment:
Q  145 tttctctccaacatacactgcaacatagccctt 177  Q
    |||||||||||||||||| ||||||||||||||    
T  27514910 tttctctccaacatacaccgcaacatagccctt 27514878  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 1754742 - 1754675
Alignment:
Q  111 ttcaagtatgatattgggat-acaaacggtgtcattttctctccaacatacactgcaacatagccctt 177  Q
    |||||||||||||||||||| |||  | || ||  ||||||||||| |||||||||||||||||||||    
T  1754742 ttcaagtatgatattgggatcacatgccgtttctgtttctctccaatatacactgcaacatagccctt 1754675  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 1756843 - 1756910
Alignment:
Q  111 ttcaagtatgatattgggat-acaaacggtgtcattttctctccaacatacactgcaacatagccctt 177  Q
    |||||||||||||||||||| |||||| |  ||  |||||||||||||| |||||||| |||||||||    
T  1756843 ttcaagtatgatattgggatcacaaaccgcttctgtttctctccaacattcactgcaagatagccctt 1756910  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 174
Target Start/End: Complemental strand, 21608280 - 21608247
Alignment:
Q  141 tcattttctctccaacatacactgcaacatagcc 174  Q
    ||||||||||||||||||||||||||| ||||||    
T  21608280 tcattttctctccaacatacactgcaagatagcc 21608247  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 33319569 - 33319520
Alignment:
Q  39 gcttgttatgttatggttaatagaactttttgatgcttaatcaataggaa 88  Q
    ||||||| ||||||| ||||| ||||||| | ||||||||||||||||||    
T  33319569 gcttgttttgttatgattaattgaactttgttatgcttaatcaataggaa 33319520  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 174
Target Start/End: Complemental strand, 38032305 - 38032272
Alignment:
Q  141 tcattttctctccaacatacactgcaacatagcc 174  Q
    ||||||||||||||||||||||||||| ||||||    
T  38032305 tcattttctctccaacatacactgcaagatagcc 38032272  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 174
Target Start/End: Complemental strand, 50913519 - 50913486
Alignment:
Q  141 tcattttctctccaacatacactgcaacatagcc 174  Q
    ||||||||||||||||||||||||||| ||||||    
T  50913519 tcattttctctccaacatacactgcaagatagcc 50913486  T

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