View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9723_high_4 (Length: 395)
Name: NF9723_high_4
Description: NF9723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9723_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 54147373 - 54146996
Alignment:
| Q |
1 |
tcatagaccaacacaattttgcagacattgagaagactagttaccaatgccatgttatcacaacaatgaagcctactaactcccaagcaccaaaaaacca |
100 |
Q |
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| T |
54147373 |
tcatagaccaacacaattttgtagacattgagaagactagttaccaatgccatgttatcacaacaatgaagcctactaactcccaagcactaaaaaacca |
54147274 |
T |
|
| Q |
101 |
atttatgcttaggtacactaccttcaccattagaaatttatcggtctcccaatcaaaacaaaaaagcaacatgctaatcaaccaataggaactaattttg |
200 |
Q |
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| T |
54147273 |
atttatgcttaggtacactaccttcaccattataaatttatcggtctcccaatcaaaacaaaa--gcaacatgctaatcaaccaataggaactaattttg |
54147176 |
T |
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| Q |
201 |
accagcaaattaaatgagaaaaagaagaaacaaaccatattgaatagtcatggacgaacaaaaggattgactagaacaaagaaaagcctaatcacgaaca |
300 |
Q |
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| T |
54147175 |
accagcaaattaaatgagaaaaagaagaaacaaaccatattgaatagtcatggacgaacaaaaggattgactagaacaaagaaaagcctaattacgaaca |
54147076 |
T |
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| Q |
301 |
ctcacaaatttcccaaatgttgacagaacaattagaacagccaaataaaaaatgaacaaacccaccaatttagaaaaaac |
380 |
Q |
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| T |
54147075 |
ctcacaaatttcccaaatgttgacagaacaattagaacagccaaataaaaaatgaacaaacccaccaatttagaaaaaac |
54146996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 24487454 - 24487524
Alignment:
| Q |
13 |
acaattttgcagacattgagaagactagttaccaatgccatgttatcacaacaatgaagcctactaactcc |
83 |
Q |
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| T |
24487454 |
acaattttacagacaacgagaagactagatacaaatatcatgttgccacaacaaagaagcctactaactcc |
24487524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 24487555 - 24487600
Alignment:
| Q |
119 |
taccttcaccattagaaatt-tatcggtctcccaatcaaaacaaaa |
163 |
Q |
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| T |
24487555 |
taccttcaccactagatattctatcggtctcccaatcaaaacaaaa |
24487600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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