View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9723_high_5 (Length: 391)
Name: NF9723_high_5
Description: NF9723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9723_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 46670525 - 46670160
Alignment:
| Q |
19 |
cgtgtaaaattggaagattaattaatacctgatatactcagcttgttctaacgtgcacaagtgatctaagcggtgaaccatgcaagatcattttttaatg |
118 |
Q |
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| T |
46670525 |
cgtgtaaagttggaagattaattaatacctgatatactcagcttgttctaacgtgcacaagtgatctaagcggtgtaccatgcaagatcattttttaatg |
46670426 |
T |
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| Q |
119 |
gcgcttactagcttgtgctctaacacttagatacatgttgaggaacttacatgcagcaattttatattgaaaagaacaatatttgtatttttaagaattt |
218 |
Q |
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| T |
46670425 |
gcgcttactagcttgtgctctaacacttagacacatgttgaggaacttacatgcagcaattttatattgaaaagaacaatatttgtatttttaagaattt |
46670326 |
T |
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| Q |
219 |
aaatac----aatttgaggtagaattattatatgtagatcattaacattaacacgtattctaaagacacatgttaacatttatannnnnnnnaatattag |
314 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
46670325 |
aaatacatgaaatttgaggcagaattattatatgtagatcattaacattaacacgtgttctaaagacacatgttaacatttata-tttttttaatattag |
46670227 |
T |
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| Q |
315 |
ataataaagttctaccaaatgcaatgatgcaccattcacgcaaaatctactcctttcttctcctttg |
381 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||| |
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| T |
46670226 |
ataataaagttctaccaaatgcaatgatacaccattcatgcaaaatctactcctttcttcccctttg |
46670160 |
T |
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