View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9723_high_6 (Length: 379)
Name: NF9723_high_6
Description: NF9723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9723_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 337106 - 336755
Alignment:
| Q |
18 |
acaaatgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccactgacccattttgttgttgaacatgattcaataaaggaatcaatgatttc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
337106 |
acaaatgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccaccgacccattttgttgttgaacatgattcaataaaggaatcaatgatttc |
337007 |
T |
|
| Q |
118 |
tcaactttgttgtgaatgattttctcttgaaaagcttcaaagcttctttgtttgaagagatatcggagaagattcctattgtatttccattgatgtgaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
337006 |
tcaactttgttgtgaatgattttctcttgaaaagcttcaaagcttctttgtttgaagagatattggagaagattcctattgtatttccattgatgtgaat |
336907 |
T |
|
| Q |
218 |
ctgttgtgaaaattcctaaaccaaaaggttggaacgtttcacgaaacctttcacctttctcaaaattgtcaaacctcttgctcatgatgtagtgaacatt |
317 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336906 |
ctgtagtgaaaattcctaaaccaaaaggttggaacgtttcacgaaacctttcacctttctcaaaattgtcaaacctcttgctcatgatgtagtgaacatt |
336807 |
T |
|
| Q |
318 |
caatggatcgtttgtgattacagcatacatgttggtaaaccatggtcctatg |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
336806 |
caatggatcgtttgtgattacagcatacatgttggtaaaccatggtcctatg |
336755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 341144 - 340795
Alignment:
| Q |
18 |
acaaatgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccactgacccattttgttgttgaacatgattcaataaaggaatcaatgatttc |
117 |
Q |
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|||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
341144 |
acaaatgttatcgaatgtgaatcgattgaacacatcttgtaaatcgaccaccgaccctttttgttgtagaacatgattcaatattggaatcaatgatttc |
341045 |
T |
|
| Q |
118 |
tcaactttgttgtgaatgattttctcttgaaaagcttcaaagcttctttgtttgaagagatatcggagaagattcctattgtatttccattgatgtgaat |
217 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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|
| T |
341044 |
tcaactttgttgtgaattatcttctcttgaaaagcttcaaagcttctttgtttgaagagatattggagaagattcctattgtatttccattgatctgaat |
340945 |
T |
|
| Q |
218 |
ctgttgtgaaaattcctaaaccaaaaggttggaacgtttcacgaaacctttcacctttctcaaaattgtcaaacctcttgctcatgatgtagtgaacatt |
317 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||| ||||||||||| |||||||| |||| |||||||| |||||||||||||||||||||||||| |
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| T |
340944 |
ctgtagtgaaaattcctaaaccaaaaggttcaaacatttcacgaaacaaatcacctttgacaaagttgtcaaagctcttgctcatgatgtagtgaacatt |
340845 |
T |
|
| Q |
318 |
caatggatcgtttgtgattacagcatacatgttggtaaaccatggtccta |
367 |
Q |
| |
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||||||||| ||||||| ||| |||||||| ||||||||||||||||| |
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|
| T |
340844 |
caatggatcagttgtgataacaccatacatgccggtaaaccatggtccta |
340795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 332191 - 332085
Alignment:
| Q |
19 |
caaatgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccactgacccattttgttgttgaacatgattcaataaaggaatcaatgatttct |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||| || |||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
332191 |
caaatgttatcgaatgtgaagcgattgaatacatcttgtaaatcgaccatcgaccctttttgttgttgaacatgtttcaataaaggaaataatgatttct |
332092 |
T |
|
| Q |
119 |
caacttt |
125 |
Q |
| |
|
||||||| |
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|
| T |
332091 |
caacttt |
332085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 376887 - 376738
Alignment:
| Q |
18 |
acaaatgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccactgacccattttgttgttgaacatgattcaataaaggaatcaatgatttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||| ||||| | ||| ||||||||||| | || |
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| T |
376887 |
acaaatgttatcaaatgtgaagcgattgaagacatcttgtaaatcaaccactgaccc---ttgttgttgtacatggtccaacaaaggaatcaaacttctc |
376791 |
T |
|
| Q |
118 |
tcaactttgttgtgaatgattttctcttgaaaagcttcaaagcttctttgttt |
170 |
Q |
| |
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|| | ||||| |||||||||||||||||||| |||||||||||||||||| |
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|
| T |
376790 |
tccaacttgttttgaatgattttctcttgaaacaattcaaagcttctttgttt |
376738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 356268 - 356396
Alignment:
| Q |
18 |
acaaatgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccactgacccattttgttgttgaacatgattcaataaaggaatcaatgatttc |
117 |
Q |
| |
|
||||||||| || |||||||| |||||||| || ||||||||||| |||||||| || ||||||||| ||||| | ||| ||||||||||| |||| |
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|
| T |
356268 |
acaaatgttgtcgaatgtgaaacgattgaagacatcttgtaaatccaccactgagcc---ttgttgttgtacatggtccaacaaaggaatcaaacttttc |
356364 |
T |
|
| Q |
118 |
tcaactttgttgtgaatgattttctcttgaaa |
149 |
Q |
| |
|
|| | ||||| ||||||||||||| |||||| |
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|
| T |
356365 |
tccaacttgttttgaatgattttcttttgaaa |
356396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 347609 - 347737
Alignment:
| Q |
18 |
acaaatgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccactgacccattttgttgttgaacatgattcaataaaggaatcaatgatttc |
117 |
Q |
| |
|
||||||||| | |||||||| |||||||| || ||||||||||| ||||||||||| ||||||||| ||||| | || ||||||||||| | || |
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|
| T |
347609 |
acaaatgttgttgaatgtgaaacgattgaagacatcttgtaaatccaccactgaccc---ttgttgttgtacatggtcaaacaaaggaatcaaacttctc |
347705 |
T |
|
| Q |
118 |
tcaactttgttgtgaatgattttctcttgaaa |
149 |
Q |
| |
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|| | ||||| ||||||||||||| |||||| |
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|
| T |
347706 |
tccaacttgttttgaatgattttcttttgaaa |
347737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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