View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9723_high_7 (Length: 356)
Name: NF9723_high_7
Description: NF9723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9723_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 346
Target Start/End: Original strand, 55178566 - 55178896
Alignment:
| Q |
16 |
caattaaaaacagtaaaattgagaattcataaataagaactttcttcatgtatggtaaactagtactaattagcagcagtgatgttatgagtctgacctg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
55178566 |
caattaaaaacagtaaaattgagaattcataaataagaactttcttcatgtatggtaaactagtactaattagcagcagtgatgttatgagtccgacctg |
55178665 |
T |
|
| Q |
116 |
aagagaattgacaagtgcaagagttgagaacctcaaagataaaccacttgcagctactgaaactaataacatttttatagctctggccctcaatttgaga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55178666 |
aagagaattgacaagtgcaagagttgagaacctcaaagataaaccacttgcagctactgaaactaataacatttttatagctctggccctcaatttgaga |
55178765 |
T |
|
| Q |
216 |
tgaactgtgtcgattgttattatatttgtgtgttgagcgatccggtaagttcattacccattgtacaacagacatgtcccttgaaatttctgtatgcatc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55178766 |
tgaactgtgtcgattgttattatatttgtgtgttgagcgatccggtaagttcattacccattgtacaacagacatgtcccttgaaatttctgtatgcatc |
55178865 |
T |
|
| Q |
316 |
ctgcggagaagtggccaaccaagcttctgtg |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
55178866 |
ctgcggagaagtggccaaccaagcttctgtg |
55178896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University