View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9723_low_1 (Length: 559)
Name: NF9723_low_1
Description: NF9723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9723_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 202 - 543
Target Start/End: Complemental strand, 33507848 - 33507509
Alignment:
| Q |
202 |
ttattggttttccccgaaatgaaacttcattcattagaacacaagaaggtaaagaatgtccggaaatgtgggagttagttttagtttcaagtgtacgaca |
301 |
Q |
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| T |
33507848 |
ttattggttttcccctaaatggaacttcattcattagaacacaag---gtaaggaatgtccggaaatgtgggagttagttttagtttcaagtgta-gaca |
33507753 |
T |
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| Q |
302 |
aatgcttctaactttactatgtatgcaatatt--tgttttttactatgttgggttgtgtgcattgacattgacacaaacatctacacagcactcagtgtg |
399 |
Q |
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| T |
33507752 |
aatgcttctaactttactatgtatgcaatattgttgttttttactatgttgggttgtgtgcattgacattgacacaaacacctacacaacactcggtgtg |
33507653 |
T |
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| Q |
400 |
agtgttgtgttaaatgtctctgtcaatgcttcacaacccaacataggtatattctgatcttggacattaaacaggccttcaatccgaaggtgctatatat |
499 |
Q |
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| T |
33507652 |
agtgttgtgttaaatgtcggtgtcaatgtttcacaacccaacataggtatattctgaccttggacactaaacaggccttcaatccgaaggtgctatatat |
33507553 |
T |
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| Q |
500 |
aatgcaactttagtgtttggaattgaatttgaaggtttagtttt |
543 |
Q |
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| T |
33507552 |
aatgcaactttagtgtttggaattgaatttgaaggtttagtttt |
33507509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 4 - 169
Target Start/End: Complemental strand, 33508046 - 33507880
Alignment:
| Q |
4 |
cgcacgtagggtagtggtacaatgaaggtttccacccaatagaagacgaaccaaacagttttgcgcgcgacgatttcatttccctctctc----tctccc |
99 |
Q |
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| T |
33508046 |
cgcacgtagggtagt---acaatgaaggtttccacccaatagaagacgaaccaaacagttttgggcgcgacgatttcatttccctctctccctctctctc |
33507950 |
T |
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| Q |
100 |
ctcgaagaagaagaagaatgccacgcagaggaagcggttcgcaacggaagaagagaccctcgggtagtta |
169 |
Q |
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| T |
33507949 |
ctcgaagaagaagaagaatgccacgcagaggaagcggttcgcaacggaagaagagaccatcgggtagtta |
33507880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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