View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9723_low_13 (Length: 310)
Name: NF9723_low_13
Description: NF9723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9723_low_13 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
| [»] scaffold0531 (1 HSPs) |
| | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 8031773 - 8032070
Alignment:
| Q |
13 |
agaaacaacatagatttataacttttatgctttaaagttaataatcaatcaacatttctattactcaggggtccaggtttgactatacttctcttatcat |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8031773 |
agaaacaaaatagatttataacttttatgctttaaagttaataatcaatcaacatttctattactcaggggtccaggtttgactatacttctcttatcat |
8031872 |
T |
|
| Q |
113 |
ggaccatcactctgtatacattgtggcaaatggttgagatgcatgaaatgattcccggaaaacgttttgatagataccatgaattaggccaacatgcgtt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8031873 |
ggaccatcactctgtatacattgtggcaaatggttgagatgcatgaaatgattccgggaaaacgttttgatagataccatgaattaggtcaacatgcgtt |
8031972 |
T |
|
| Q |
213 |
tggtgaaaagttaggcctttatattgtggtgcctcaacaacttatagtagaagttgggggcgacattgtctacatggtcaccggaggtgcatcattgc |
310 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8031973 |
tggcgaaaagttaggcctttatattgtggttcctcaacaacttatagtagaagttgggggcgacattgtctacatggtcaccggaggtgcatcattgc |
8032070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 74 - 310
Target Start/End: Original strand, 8041713 - 8041949
Alignment:
| Q |
74 |
tactcaggggtccaggtttgactatacttctcttatcatggaccatcactctgtatacattgtggcaaatggttgagatgcatgaaatgattcccggaaa |
173 |
Q |
| |
|
|||||||||||||||||||| |||||||| || | ||||||| |||||| ||||| || |||||||||||||||||||||||||| ||| |||| ||||| |
|
|
| T |
8041713 |
tactcaggggtccaggtttggctatacttgtcctttcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaa |
8041812 |
T |
|
| Q |
174 |
acgttttgatagataccatgaattaggccaacatgcgtttggtgaaaagttaggcctttatattgtggtgcctcaacaacttatagtagaagttgggggc |
273 |
Q |
| |
|
|||| |||||| ||| |||||||||| |||||||| ||||||||||||||||| | | |||||| |||||||||||||| | ||| | || ||| |
|
|
| T |
8041813 |
acgtcttgatacatataatgaattagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaggtcgggtcg |
8041912 |
T |
|
| Q |
274 |
gacattgtctacatggtcaccggaggtgcatcattgc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8041913 |
gacattgtctacatggtcaccggaggtgcatcattgc |
8041949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 77 - 310
Target Start/End: Complemental strand, 7971972 - 7971739
Alignment:
| Q |
77 |
tcaggggtccaggtttgactatacttctcttatcatggaccatcactctgtatacattgtggcaaatggttgagatgcatgaaatgattcccggaaaacg |
176 |
Q |
| |
|
||||||||||||| ||| |||||||| | | ||||||| |||||| ||||| || |||||||||||||||||||||||||| ||| |||| |||||||| |
|
|
| T |
7971972 |
tcaggggtccaggattggctatacttgttctttcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacg |
7971873 |
T |
|
| Q |
177 |
ttttgatagataccatgaattaggccaacatgcgtttggtgaaaagttaggcctttatattgtggtgcctcaacaacttatagtagaagttgggggcgac |
276 |
Q |
| |
|
| |||||| ||| |||||||||| |||||||| ||||||||||||||||| | | |||||| |||||||||||||| | ||| | || ||| ||| |
|
|
| T |
7971872 |
tcttgatacatataatgaattagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaggtcgggtcggac |
7971773 |
T |
|
| Q |
277 |
attgtctacatggtcaccggaggtgcatcattgc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
7971772 |
attgtctacatggtcaccggaggtgcatcattgc |
7971739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 136 - 310
Target Start/End: Complemental strand, 7979481 - 7979307
Alignment:
| Q |
136 |
tggcaaatggttgagatgcatgaaatgattcccggaaaacgttttgatagataccatgaattaggccaacatgcgtttggtgaaaagttaggcctttata |
235 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| |||||||| ||||| |||| ||||| ||||||| |
|
|
| T |
7979481 |
tggcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatagataccatgaattaggtcaacatgcttttgggaaaaaattaggtctttata |
7979382 |
T |
|
| Q |
236 |
ttgtggtgcctcaacaacttatagtagaagttgggggcgacattgtctacatggtcaccggaggtgcatcattgc |
310 |
Q |
| |
|
|||||||||||||||||||| | |||||| |||| | ||||||| || |||||||| || || ||||||||| |
|
|
| T |
7979381 |
ttgtggtgcctcaacaacttgtggtagaaattggtgttaacattgtttatatggtcactgggggaacatcattgc |
7979307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 61 - 306
Target Start/End: Complemental strand, 3511 - 3266
Alignment:
| Q |
61 |
tcaacatttctattactcaggggtccaggtttgactatacttctcttatcatggaccatcactctgtatacattgtggcaaatggttgagatgcatgaaa |
160 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3511 |
tcaatatttctactactcaggggtccaggtttgactatacttatcttatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaa |
3412 |
T |
|
| Q |
161 |
tgattcccggaaaacgttttgatagataccatgaattaggccaacatgcgtttggtgaaaagttaggcctttatattgtggtgcctcaacaacttatagt |
260 |
Q |
| |
|
|| |||| ||||||||||||||||| ||||||||| | || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3411 |
tggttcctggaaaacgttttgataggtaccatgaactgggacaacacgcgtttggcgaaaagttaggcctttatattgtggtgcctcaacaacttgtagt |
3312 |
T |
|
| Q |
261 |
agaagttgggggcgacattgtctacatggtcaccggaggtgcatca |
306 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
3311 |
agaagttggggtgaacattgtttacatggtcaccggaggtgcatca |
3266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 77 - 310
Target Start/End: Complemental strand, 41382371 - 41382138
Alignment:
| Q |
77 |
tcaggggtccaggtttgactatacttctcttatcatggaccatcactctgtatacattgtggcaaatggttgagatgcatgaaatgattcccggaaaacg |
176 |
Q |
| |
|
|||||||||||||||||| ||||||| || | ||||||| ||||||||| || || ||||||||||||||||||||||||| ||| |||| |||||||| |
|
|
| T |
41382371 |
tcaggggtccaggtttgattatacttatcctttcatggatcatcactctctacaccctgtggcaaatggttgagatgcatgagatggttccgggaaaacg |
41382272 |
T |
|
| Q |
177 |
ttttgatagataccatgaattaggccaacatgcgtttggtgaaaagttaggcctttatattgtggtgcctcaacaacttatagtagaagttgggggcgac |
276 |
Q |
| |
|
| |||||| ||| ||||||| ||||||||||||||||||||||||||||| | | |||||| |||||||||||||| | ||| ||||||||| ||| |
|
|
| T |
41382271 |
tcttgatacatataatgaattgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggac |
41382172 |
T |
|
| Q |
277 |
attgtctacatggtcaccggaggtgcatcattgc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41382171 |
attgtctacatggtcaccggaggtgcatcattgc |
41382138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 43853161 - 43853219
Alignment:
| Q |
136 |
tggcaaatggttgagatgcatgaaatgattcccggaaaacgttttgatagataccatga |
194 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| |||||||| |||||||| |||||||| |
|
|
| T |
43853161 |
tggcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatga |
43853219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 136 - 299
Target Start/End: Complemental strand, 14198878 - 14198715
Alignment:
| Q |
136 |
tggcaaatggttgagatgcatgaaatgattcccggaaaacgttttgatagataccatgaattaggccaacatgcgtttggtgaaaagttaggcctttata |
235 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| |||||||| |||||||| |||||| | || ||| |||| |||||||||||||| || || |||| |
|
|
| T |
14198878 |
tggcaaatggttgagatgcatgaaatggtacccgggaaacgtttcgatagatatcatgaactgggtcaatatgcttttggtgaaaagttgggtctgtata |
14198779 |
T |
|
| Q |
236 |
ttgtggtgcctcaacaacttatagtagaagttgggggcgacattgtctacatggtcaccggagg |
299 |
Q |
| |
|
|||| ||||| ||||||||||| || ||||| || | |||||||||||||||| |||||||| |
|
|
| T |
14198778 |
ttgttgtgccacaacaacttattgttgaagtcggcgttaacattgtctacatggtaaccggagg |
14198715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 38827453 - 38827416
Alignment:
| Q |
136 |
tggcaaatggttgagatgcatgaaatgattcccggaaa |
173 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38827453 |
tggcaaatggttgagatgcatgaaatagttcccggaaa |
38827416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University