View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9723_low_14 (Length: 300)
Name: NF9723_low_14
Description: NF9723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9723_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 31821174 - 31820887
Alignment:
| Q |
12 |
agagagaaagaatgaataaaagaaggtctttgtttgagtatgtgaaaggaggggtagaaaatatagagaaagaaatgaacaaaaataagatggaagaaac |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31821174 |
agagagaaagaatgaataaaagaaggtctttgtttgagtatgtgaaaggaggggtagaaaatatagagaaagagatgaacaaaaataagatggaagaaac |
31821075 |
T |
|
| Q |
112 |
aaagattatctattttgtattttattta-------------gataagttaaacttagtattaggcta-ttttgtttagttgaggtttggtgaaatgagat |
197 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31821074 |
aaagattatctattttgtattttttttaattattttttttagataagttaaacttagtattaggctacttttgtttagttgaggtttggtgaaatgaggc |
31820975 |
T |
|
| Q |
198 |
tgtctttgaagaaactaatatgacagaaaatagtgttggtgaaggagagttgtgttcttcacattaccaacttattggtctatatatt |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31820974 |
tgtctttgaagaaactaatatgacagaaaatagtgttggtgaaggagagttgtgttcttcacattaccaacttattggtctatatatt |
31820887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University