View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9723_low_19 (Length: 252)

Name: NF9723_low_19
Description: NF9723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9723_low_19
NF9723_low_19
[»] chr1 (3 HSPs)
chr1 (1-240)||(24263286-24263511)
chr1 (1-37)||(25944315-25944351)
chr1 (5-41)||(29794073-29794109)
[»] chr6 (4 HSPs)
chr6 (2-41)||(33828529-33828568)
chr6 (1-43)||(4324576-4324618)
chr6 (5-43)||(4247235-4247273)
chr6 (5-41)||(30004785-30004821)
[»] chr2 (2 HSPs)
chr2 (4-41)||(31096212-31096249)
chr2 (3-43)||(32098460-32098500)
[»] chr7 (1 HSPs)
chr7 (5-41)||(504115-504151)
[»] chr5 (6 HSPs)
chr5 (2-41)||(41052773-41052812)
chr5 (12-41)||(12408225-12408254)
chr5 (4-41)||(12521449-12521486)
chr5 (5-41)||(6725120-6725156)
chr5 (11-43)||(11667065-11667097)
chr5 (5-41)||(14716621-14716657)
[»] chr4 (4 HSPs)
chr4 (6-41)||(19304460-19304495)
chr4 (1-43)||(25497455-25497497)
chr4 (5-41)||(33640991-33641027)
chr4 (4-40)||(52734714-52734750)
[»] chr8 (2 HSPs)
chr8 (4-41)||(4271830-4271867)
chr8 (3-39)||(41871876-41871912)
[»] chr3 (4 HSPs)
chr3 (3-40)||(28289270-28289307)
chr3 (4-41)||(49587076-49587113)
chr3 (3-39)||(33965641-33965677)
chr3 (5-41)||(37308216-37308252)
[»] scaffold0085 (1 HSPs)
scaffold0085 (5-41)||(26192-26228)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 24263286 - 24263511
Alignment:
Q  1 acgtttatgctataagcacttaattaaactgtttatccaaatatcgtaaataataatttgttgcttattaaatgataagcaattatgatacattgattat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |    
T  24263286 acgtttatgctataagcacttaattaaactgtttatccaaatatcgtaaataataatttgttgcttattaaatgataagcaatta--------------t 24263371  T
Q  101 ggtaccttggaacttttggagtttttagtagctgcagaattgttgccatcaatttctactttaggttgagatacttcattcttgggttcaatttctgcat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24263372 ggtaccttggaacttttggagtttttagtagctgcagaattgttgccatcaatttctactttgggttgagatacttcattcttgggttcaatttctgcat 24263471  T
Q  201 taccattgtcttcaacttctttatgtatgtgttctacctt 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24263472 taccattgtcttcaacttctttatgtatgtgttctacctt 24263511  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25944351 - 25944315
Alignment:
Q  1 acgtttatgctataagcacttaattaaactgtttatc 37  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  25944351 acgtatatgctataagcacttaattaaattgtttatc 25944315  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 29794073 - 29794109
Alignment:
Q  5 ttatgctataagcacttaattaaactgtttatccaaa 41  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  29794073 ttatgctataagcgcttaattaagctgtttatccaaa 29794109  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 33828568 - 33828529
Alignment:
Q  2 cgtttatgctataagcacttaattaaactgtttatccaaa 41  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  33828568 cgtttatgctataagcacttagttaaactgtttatccaaa 33828529  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 4324576 - 4324618
Alignment:
Q  1 acgtttatgctataagcacttaattaaactgtttatccaaata 43  Q
    |||||||||||| ||||||||||||||| ||||||||||||||    
T  4324576 acgtttatgctaaaagcacttaattaaattgtttatccaaata 4324618  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 4247235 - 4247273
Alignment:
Q  5 ttatgctataagcacttaattaaactgtttatccaaata 43  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  4247235 ttatgctataagcacttaattaagttgtttatccaaata 4247273  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 30004821 - 30004785
Alignment:
Q  5 ttatgctataagcacttaattaaactgtttatccaaa 41  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  30004821 ttatgctataagcactcaattaaattgtttatccaaa 30004785  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 31096249 - 31096212
Alignment:
Q  4 tttatgctataagcacttaattaaactgtttatccaaa 41  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  31096249 tttatgctataagcacttaattaaactgtgtatccaaa 31096212  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 32098460 - 32098500
Alignment:
Q  3 gtttatgctataagcacttaattaaactgtttatccaaata 43  Q
    ||||||||||||||||||||| |||  ||||||||||||||    
T  32098460 gtttatgctataagcacttaagtaagttgtttatccaaata 32098500  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 504151 - 504115
Alignment:
Q  5 ttatgctataagcacttaattaaactgtttatccaaa 41  Q
    |||||||||||||||||||||||||| ||||||||||    
T  504151 ttatgctataagcacttaattaaactatttatccaaa 504115  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 41052812 - 41052773
Alignment:
Q  2 cgtttatgctataagcacttaattaaactgtttatccaaa 41  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  41052812 cgtttatgctacaagcacttaattaaattgtttatccaaa 41052773  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 12408254 - 12408225
Alignment:
Q  12 ataagcacttaattaaactgtttatccaaa 41  Q
    ||||||||||||||||||||||||||||||    
T  12408254 ataagcacttaattaaactgtttatccaaa 12408225  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 12521486 - 12521449
Alignment:
Q  4 tttatgctataagcacttaattaaactgtttatccaaa 41  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  12521486 tttatgctaaaagcacttaattaagctgtttatccaaa 12521449  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 6725156 - 6725120
Alignment:
Q  5 ttatgctataagcacttaattaaactgtttatccaaa 41  Q
    |||||||||||||||||||||||| | ||||||||||    
T  6725156 ttatgctataagcacttaattaaattatttatccaaa 6725120  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 11667097 - 11667065
Alignment:
Q  11 tataagcacttaattaaactgtttatccaaata 43  Q
    ||||||| |||||||||||||||||||||||||    
T  11667097 tataagcgcttaattaaactgtttatccaaata 11667065  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 14716621 - 14716657
Alignment:
Q  5 ttatgctataagcacttaattaaactgtttatccaaa 41  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  14716621 ttatgctataagcacttaattaagctgtatatccaaa 14716657  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 19304495 - 19304460
Alignment:
Q  6 tatgctataagcacttaattaaactgtttatccaaa 41  Q
    |||||||||||||||||||||| |||||||||||||    
T  19304495 tatgctataagcacttaattaatctgtttatccaaa 19304460  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25497497 - 25497455
Alignment:
Q  1 acgtttatgctataagcacttaattaaactgtttatccaaata 43  Q
    ||||||||||||||||| ||||||| | |||||||||||||||    
T  25497497 acgtttatgctataagcgcttaattgatctgtttatccaaata 25497455  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 33641027 - 33640991
Alignment:
Q  5 ttatgctataagcacttaattaaactgtttatccaaa 41  Q
    |||| |||||||||||||||||| |||||||||||||    
T  33641027 ttattctataagcacttaattaagctgtttatccaaa 33640991  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 52734750 - 52734714
Alignment:
Q  4 tttatgctataagcacttaattaaactgtttatccaa 40  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  52734750 tttatgctataaacacttaattaagctgtttatccaa 52734714  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 4271867 - 4271830
Alignment:
Q  4 tttatgctataagcacttaattaaactgtttatccaaa 41  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  4271867 tttatactataagcacttaattaaactgtttagccaaa 4271830  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 41871912 - 41871876
Alignment:
Q  3 gtttatgctataagcacttaattaaactgtttatcca 39  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  41871912 gtttatgctataagcgcttaattaatctgtttatcca 41871876  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 28289270 - 28289307
Alignment:
Q  3 gtttatgctataagcacttaattaaactgtttatccaa 40  Q
    |||||||||| || ||||||||||||||||||||||||    
T  28289270 gtttatgctaaaaacacttaattaaactgtttatccaa 28289307  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 49587076 - 49587113
Alignment:
Q  4 tttatgctataagcacttaattaaactgtttatccaaa 41  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  49587076 tttatgctagaagcgcttaattaaactgtttatccaaa 49587113  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 33965641 - 33965677
Alignment:
Q  3 gtttatgctataagcacttaattaaactgtttatcca 39  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  33965641 gtttatgctataagcgcttaattaagctgtttatcca 33965677  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 37308216 - 37308252
Alignment:
Q  5 ttatgctataagcacttaattaaactgtttatccaaa 41  Q
    |||||||||||||||||||||||  ||||||||||||    
T  37308216 ttatgctataagcacttaattaagttgtttatccaaa 37308252  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 26192 - 26228
Alignment:
Q  5 ttatgctataagcacttaattaaactgtttatccaaa 41  Q
    |||||||||||||||||||||||  ||||||||||||    
T  26192 ttatgctataagcacttaattaaggtgtttatccaaa 26228  T

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