View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9723_low_2 (Length: 483)
Name: NF9723_low_2
Description: NF9723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9723_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Original strand, 4569749 - 4570195
Alignment:
| Q |
18 |
gggtactaactgttcaacaaaatgggaagatgggtcgtcgtcgaggtagtttacggattcgagagtgatgtctacggtggcgtgaatgagaggaacgctg |
117 |
Q |
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| T |
4569749 |
gggtactaactgttcaacaaaatgggaagatgggtcgtcgtcgaggtagtttacggattcgagagtgatgtctacggtggcgtggatgagaggaacgctg |
4569848 |
T |
|
| Q |
118 |
tcttggcttttggagcagaagagttcgaggcggtggttgtggtagcggagtgtggcggcgagtgggtagtaatgagggagagtttttgagagggaggagg |
217 |
Q |
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| T |
4569849 |
tcttggcttttggagcagaagagttcgaggcggtggttgtggtagcggagtgtggcggcgagtgggtagtaatgagggagagtttttgagagggaggagg |
4569948 |
T |
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| Q |
218 |
agatgacggtgaagggatcannnnnnnnnnnnnnnnnnnctgtgtaagcgcggaggtagcgtatggttgtattgaggttgcggtcggtgtcgaggtggga |
317 |
Q |
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| T |
4569949 |
agatgacggtgaagggatcatggtggtgggtggtggtggctgtgtaagcgcggaggtagcgtatggttgtattgaggttgcggtcgatgtcgaggtggga |
4570048 |
T |
|
| Q |
318 |
gagagggagggtgtggtcttcaaggaagggggtgtgagaaggaaaaatgagaatttgttctttaattttcaacattttaaatttaattgtatggtttgtg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
4570049 |
gagagggagggtgtggtcttcaaggaagggggtgtgagaaggaaaaatgagagtttgttctttgattttcaacat------tttaattgtatggtttgtg |
4570142 |
T |
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| Q |
418 |
ttatgttgtgaggttatttttgcttaatgctacctgattgctttgctttgtct |
470 |
Q |
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| T |
4570143 |
ttatgttgtgaggttatttttgcttaatgctacctgattgctttgctttgtct |
4570195 |
T |
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