View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9723_low_21 (Length: 241)
Name: NF9723_low_21
Description: NF9723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9723_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 11340622 - 11340843
Alignment:
| Q |
1 |
tgaatttgtaagtatttaagcaattctacttctaaggagccagtgtgaacattaaagtactttcatgttctgatatattggcataagaggaagaaactag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11340622 |
tgaatttgtaagtatttaagcaattctacttctaaggagctagtgtgatcatttt--tactttcatgttcaaatatattggcataagaggaagaaactag |
11340719 |
T |
|
| Q |
101 |
aaagagacacaatatgaagagagtcaatgtttttaaatcactaactctggttcttacatttcttgcatttgcgccaaaaatggagagcgagatcataccc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11340720 |
aaagagacacaatatgaagagagtcaatgtttttaaatcactaactctggttcttacatttcttgcatttgcgccgaaaatggagagcgagatcatacca |
11340819 |
T |
|
| Q |
201 |
ccagttattcacctgccaccacca |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
11340820 |
ccagttattcacctgccaccacca |
11340843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 11498641 - 11498862
Alignment:
| Q |
1 |
tgaatttgtaagtatttaagcaattctacttctaaggagccagtgtgaacattaaagtactttcatgttctgatatattggcataagaggaagaaactag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11498641 |
tgaatttgtaagtatttaagcaattctacttctaaggagctagtgtgatcatttt--tactttcatgttcaaatatattggcataagaggaagaaactag |
11498738 |
T |
|
| Q |
101 |
aaagagacacaatatgaagagagtcaatgtttttaaatcactaactctggttcttacatttcttgcatttgcgccaaaaatggagagcgagatcataccc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11498739 |
aaagagacacaatatgaagagagtcaatgtttttaaatcactaactctggttcttacatttcttgcatttgcgccgaaaatggagagcgagatcatacca |
11498838 |
T |
|
| Q |
201 |
ccagttattcacctgccaccacca |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
11498839 |
ccagttattcacctgccaccacca |
11498862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 32197714 - 32197491
Alignment:
| Q |
1 |
tgaatttgtaagtatttaagcaattctacttctaaggagccagtgtgaacattaaagtactttcatgttctgatatattggcataagaggaagaaactag |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||| |||| ||||||||||||||||||| |
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| T |
32197714 |
tgaatttgcaagtatttaagcaattctacttctaaggagccggtgtgaacgttaaagtactttcatgttgagatgtattagcataagaggaagaaactaa |
32197615 |
T |
|
| Q |
101 |
aaagagacacaatatgaagagagtcaatgtttttaaatcactaactctggttcttacatttcttgcatttgcgccaaaaatggagagcgagatcataccc |
200 |
Q |
| |
|
||| |||||||||| |||||| || || ||||||| || ||||||||||||| |||||||||||||||||||||||| |||||||| |||||| || |
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|
| T |
32197614 |
aaacagacacaatacaaagagaatctatatttttaactcggtaactctggttctcacatttcttgcatttgcgccaaaagtggagagccagatcagtcct |
32197515 |
T |
|
| Q |
201 |
ccagttattcacctgccaccacca |
224 |
Q |
| |
|
||||||||||| |||||||||||| |
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|
| T |
32197514 |
ccagttattcagctgccaccacca |
32197491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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