View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9723_low_23 (Length: 239)

Name: NF9723_low_23
Description: NF9723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9723_low_23
NF9723_low_23
[»] chr3 (18 HSPs)
chr3 (13-222)||(22357396-22357605)
chr3 (7-222)||(22467345-22467560)
chr3 (13-177)||(22353251-22353415)
chr3 (7-222)||(22442136-22442351)
chr3 (7-166)||(22430620-22430779)
chr3 (12-222)||(22629837-22630045)
chr3 (12-222)||(22367318-22367528)
chr3 (7-177)||(22436070-22436240)
chr3 (15-176)||(22634946-22635107)
chr3 (7-177)||(37930298-37930469)
chr3 (12-177)||(22457928-22458093)
chr3 (12-177)||(22480909-22481074)
chr3 (12-183)||(22620317-22620488)
chr3 (12-159)||(30988750-30988897)
chr3 (83-167)||(22614708-22614792)
chr3 (12-183)||(22647605-22647776)
chr3 (103-157)||(21938118-21938172)
chr3 (12-122)||(21946498-21946608)
[»] chr1 (3 HSPs)
chr1 (12-167)||(34990091-34990246)
chr1 (12-167)||(34976245-34976400)
chr1 (12-167)||(34983356-34983511)
[»] chr7 (2 HSPs)
chr7 (104-183)||(872145-872224)
chr7 (104-183)||(1233422-1233501)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 22357605 - 22357396
Alignment:
Q  13 tggaagaggttggagaaggatatttaaaagagttaaaccatagaagattggtgcaagtagattcaatcagtattgatggaagaataaaaagttgtcgtgt 112  Q
    |||||||||||| |||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  22357605 tggaagaggttgcagaaggatatttaaaagagttaatacatagaagtttggtgcaagtagattcaatcagtattgatggaagagtaaaacgttgtcgtgt 22357506  T
Q  113 tcatgatctagtgcatgcgatgatccttgaaaaatatgaggatttaagcttttgccagaatattattgaagcaagacaattgcctttaagtggaatgatt 212  Q
    |||||||||||||||||  ||||||||||||||| || || |||||||||||||| ||||||||| ||| |  | ||||||| |||||| ||||||||||    
T  22357505 tcatgatctagtgcatgaaatgatccttgaaaaacataagcatttaagcttttgcgagaatattactgagggcaaacaattgtctttaactggaatgatt 22357406  T
Q  213 cggcgcctat 222  Q
    || |||||||    
T  22357405 cgacgcctat 22357396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 22467560 - 22467345
Alignment:
Q  7 ggacgttggaagaggttggagaaggatatttaaaagagttaaaccatagaagattggtgcaagtagattcaatcagtattgatggaagaataaaaagttg 106  Q
    |||| |||||||||||||  ||||||||||||| |||||| | ||||||||| ||||||||||||| |||||| ||||||||||||||| ||||||||||    
T  22467560 ggacattggaagaggttgctgaaggatatttaatagagttgatccatagaagtttggtgcaagtagtttcaataagtattgatggaagagtaaaaagttg 22467461  T
Q  107 tcgtgttcatgatctagtgcatgcgatgatccttgaaaaatatgaggatttaagcttttgccagaatattattgaagcaagacaattgcctttaagtgga 206  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||| ||||||||| ||| |  | ||||||| |||||| ||||    
T  22467460 tcgtgttcatgatctagtgcatgcaatgatccttgataaatatgaggatttaagtttttgcaagaatattactgaggacaaacaattgtctttaactgga 22467361  T
Q  207 atgattcggcgcctat 222  Q
    |||||||| |||||||    
T  22467360 atgattcgacgcctat 22467345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 22353415 - 22353251
Alignment:
Q  13 tggaagaggttggagaaggatatttaaaagagttaaaccatagaagattggtgcaagtagattcaatcagtattgatggaagaataaaaagttgtcgtgt 112  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  22353415 tggaagaggttgcagaaggatatttaaaagagttaatccatagaagtttggtgcaagtagattcagtcagtattgatggaagagtaaaaagttgtcgtgt 22353316  T
Q  113 tcatgatctagtgcatgcgatgatccttgaaaaatatgaggatttaagcttttgccagaatatta 177  Q
    ||| |||||||||||||  |||||||||  |||||||||||||||||| |||||| |||||||||    
T  22353315 tcacgatctagtgcatgaaatgatccttagaaaatatgaggatttaagtttttgcaagaatatta 22353251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 22442351 - 22442136
Alignment:
Q  7 ggacgttggaagaggttggagaaggatatttaaaagagttaaaccatagaagattggtgcaagtagattcaatcagtattgatggaagaataaaaagttg 106  Q
    |||| |||||| |||||| ||||||||||||||||| ||||| |  |||||| ||||||||||||| ||||| |||||||||||||||| ||||||||||    
T  22442351 ggacattggaaaaggttgcagaaggatatttaaaagtgttaatctgtagaagtttggtgcaagtagtttcaaccagtattgatggaagagtaaaaagttg 22442252  T
Q  107 tcgtgttcatgatctagtgcatgcgatgatccttgaaaaatatgaggatttaagcttttgccagaatattattgaagcaagacaattgcctttaagtgga 206  Q
     ||||||||||||||||||||||  ||||||||||||||| || || |||||||||||||| ||||||||| ||| | || ||||||| |||||| ||||    
T  22442251 ccgtgttcatgatctagtgcatgaaatgatccttgaaaaacataagcatttaagcttttgcgagaatattactgagggaaaacaattgtctttaactgga 22442152  T
Q  207 atgattcggcgcctat 222  Q
    |||||||| |||||||    
T  22442151 atgattcgacgcctat 22442136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 22430779 - 22430620
Alignment:
Q  7 ggacgttggaagaggttggagaaggatatttaaaagagttaaaccatagaagattggtgcaagtagattcaatcagtattgatggaagaataaaaagttg 106  Q
    |||| ||| ||||||||| |||||||||||||| |||||| | ||||||||| |||||||||||||||||||| ||||||||||||||| ||| ||||||    
T  22430779 ggacattgaaagaggttgcagaaggatatttaatagagttgatccatagaagtttggtgcaagtagattcaataagtattgatggaagagtaagaagttg 22430680  T
Q  107 tcgtgttcatgatctagtgcatgcgatgatccttgaaaaatatgaggatttaagcttttg 166  Q
    |||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||    
T  22430679 tcgtgttcatgatctagtgcatgaaatgatccttaaaaaatatgaggatttaagcttttg 22430620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 22630045 - 22629837
Alignment:
Q  12 ttggaagaggttggagaaggatatttaaaagagttaaaccatagaagattggtgcaagtagattcaatcagtattgatggaagaataaaaagttgtcgtg 111  Q
    |||||||||||||||||||||||||||| ||||||   || |||||| ||||||||||||| |||||  |||||  |||||||| |||||||||||||||    
T  22630045 ttggaagaggttggagaaggatatttaatagagttggtccgtagaagtttggtgcaagtagtttcaacaagtat--atggaagagtaaaaagttgtcgtg 22629948  T
Q  112 ttcatgatctagtgcatgcgatgatccttgaaaaatatgaggatttaagcttttgccagaatattattgaag-caagacaattgcctttaagtggaatga 210  Q
    | ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||| ||||||||||||| | |||| |||||| |||||| ||||||||    
T  22629947 tacatgatctagtgcatgcaatgatccttgagaaatatgaggatttaagtttttgcaagaatattattgaggacaag-caattgtctttaactggaatga 22629849  T
Q  211 ttcggcgcctat 222  Q
    || | |||||||    
T  22629848 tttgacgcctat 22629837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 22367528 - 22367318
Alignment:
Q  12 ttggaagaggttggagaaggatatttaaaagagttaaaccatagaagattggtgcaagtagattcaatcagtattgatggaagaataaaaagttgtcgtg 111  Q
    ||||||||||||| ||||||| |||||| |||||| | || |||||| ||||||| |||||||   |||| ||||||||||||| || | ||||| ||||    
T  22367528 ttggaagaggttgcagaaggacatttaatagagttgatccgtagaagtttggtgcgagtagatgggatcactattgatggaagagtagacagttgccgtg 22367429  T
Q  112 ttcatgatctagtgcatgcgatgatccttgaaaaatatgaggatttaagcttttgccagaatattattgaagcaagacaattgcctttaagtggaatgat 211  Q
    ||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||| ||| |||||  || |  ||||||||||||| || |||||||||    
T  22367428 ttcatgatctagtgcatgcaatgatccttaataaacatgaggatttaagcttttgcaagagtattaccgaggacagacaattgccttcaactggaatgat 22367329  T
Q  212 tcggcgcctat 222  Q
    ||| |||||||    
T  22367328 tcgacgcctat 22367318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 22436240 - 22436070
Alignment:
Q  7 ggacgttggaagaggttggagaaggatatttaaaagagttaaaccatagaagattggtgcaagtagattcaatcagtattgatggaagaataaaaagttg 106  Q
    |||| ||||||||  ||| | |||||||||||| ||||||   | ||||||| |||||||| |||| |||||| ||||||||||||||| ||||||||||    
T  22436240 ggacattggaagatattgcaaaaggatatttaatagagttggtcaatagaagtttggtgcatgtagtttcaataagtattgatggaagagtaaaaagttg 22436141  T
Q  107 tcgtgttcatgatctagtgcatgcgatgatccttgaaaaatatgaggatttaagcttttgccagaatatta 177  Q
    ||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| |||||| |||||||||    
T  22436140 tcgtgttcatgatttagtgcatgcaatgatccttgagaaatatgaggatttaagtttttgcaagaatatta 22436070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 22635107 - 22634946
Alignment:
Q  15 gaagaggttggagaaggatatttaaaagagttaaaccatagaagattggtgcaagtagattcaatcagtattgatggaagaataaaaagttgtcgtgttc 114  Q
    |||||||||| |||||||||||||  |||||| | ||||||||| ||||||||||||| |||||  ||||||||||||||| |||||||||| || ||||    
T  22635107 gaagaggttgcagaaggatatttagtagagttgatccatagaagtttggtgcaagtagtttcaactagtattgatggaagagtaaaaagttgccgcgttc 22635008  T
Q  115 atgatctagtgcatgcgatgatccttgaaaaatatgaggatttaagcttttgccagaatatt 176  Q
    |||||||||||||||  ||||||||||| |||| | |||||||||| |||||| ||||||||    
T  22635007 atgatctagtgcatgaaatgatccttgacaaatttaaggatttaagtttttgcaagaatatt 22634946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 37930469 - 37930298
Alignment:
Q  7 ggacgttggaagaggttggagaaggatatttaaaagagttaaaccatagaagattggtgcaagtagattcaatcagtattgatggaagaataaaaagttg 106  Q
    |||| |||||| ||||||  |||||||||||||||||||||| |  |||||| ||||||||||||| ||||| | |||||||||||||| ||||||||||    
T  37930469 ggacattggaaaaggttgcggaaggatatttaaaagagttaatctgtagaagtttggtgcaagtagtttcaaccggtattgatggaagagtaaaaagttg 37930370  T
Q  107 tcgtgttcatgatctagtgcatgcgatgatcc-ttgaaaaatatgaggatttaagcttttgccagaatatta 177  Q
    |||||||||||||||||||||||  ||||||| |||| |||| |  ||||||||| |||||| |||||||||    
T  37930369 tcgtgttcatgatctagtgcatgaaatgatcctttgacaaatttatggatttaagtttttgcgagaatatta 37930298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 177
Target Start/End: Complemental strand, 22458093 - 22457928
Alignment:
Q  12 ttggaagaggttggagaaggatatttaaaagagttaaaccatagaagattggtgcaagtagattcaatcagtattgatggaagaataaaaagttgtcgtg 111  Q
    |||||||| |||| ||| |||||||||| ||| || | |  |||| | ||||||||||||| |||||| |||||||||||||||  |||||||||| |||    
T  22458093 ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg 22457994  T
Q  112 ttcatgatctagtgcatgcgatgatccttgaaaaatatgaggatttaagcttttgccagaatatta 177  Q
    |||||||||| ||||||||  ||||||||||||||| ||| || ||||| |||||| |||||||||    
T  22457993 ttcatgatctggtgcatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatatta 22457928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 177
Target Start/End: Complemental strand, 22481074 - 22480909
Alignment:
Q  12 ttggaagaggttggagaaggatatttaaaagagttaaaccatagaagattggtgcaagtagattcaatcagtattgatggaagaataaaaagttgtcgtg 111  Q
    |||||||| |||| ||| |||||||||| ||| || | |  |||| | ||||||||||||| |||||| |||||||||||||||  |||||||||| |||    
T  22481074 ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg 22480975  T
Q  112 ttcatgatctagtgcatgcgatgatccttgaaaaatatgaggatttaagcttttgccagaatatta 177  Q
    |||||||||| ||||||||  ||||||||||||||| ||| || ||||| |||||| |||||||||    
T  22480974 ttcatgatctggtgcatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatatta 22480909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 22620488 - 22620317
Alignment:
Q  12 ttggaagaggttggagaaggatatttaaaagagttaaaccatagaagattggtgcaagtagattcaatcagtattgatggaagaataaaaagttgtcgtg 111  Q
    |||||||| |||| ||||||||| |||| |||||| | ||||||||| ||||||||||||  |||| | || || ||||||| || |||||||||| | |    
T  22620488 ttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaaaaagttgttgcg 22620389  T
Q  112 ttcatgatctagtgcatgcgatgatccttgaaaaatatgaggatttaagcttttgccagaatattattgaag 183  Q
    ||||||||||| | | |  |||||| |||||||| | ||||||| |||| |||||| || |||||| |||||    
T  22620388 ttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagtgaag 22620317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 30988897 - 30988750
Alignment:
Q  12 ttggaagaggttggagaaggatatttaaaagagttaaaccatagaagattggtgcaagtagattcaatcagtattgatggaagaataaaaagttgtcgtg 111  Q
    |||||||| |||| |||||||||||||| |||||| | ||||||||| ||||||||||||  |||  | ||  ||||||| | |   ||| |||||||||    
T  30988897 ttggaagacgttgcagaaggatatttaacagagttgatccatagaagcttggtgcaagtatcttcggttagagttgatggtaaagctaaaggttgtcgtg 30988798  T
Q  112 ttcatgatctagtgcatgcgatgatccttgaaaaatatgaggatttaa 159  Q
    ||||||||||| | |  |  |||||||||||||||| |||||||||||    
T  30988797 ttcatgatctaatacgcgatatgatccttgaaaaatttgaggatttaa 30988750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 167
Target Start/End: Complemental strand, 22614792 - 22614708
Alignment:
Q  83 tattgatggaagaataaaaagttgtcgtgttcatgatctagtgcatgcgatgatccttgaaaaatatgaggatttaagcttttgc 167  Q
    ||||||||||| | | |||||||||||||||||||||||| | | || ||||||| ||||||||| | |||||||||| ||||||    
T  22614792 tattgatggaaaagttaaaagttgtcgtgttcatgatctattacgtgtgatgatctttgaaaaatttaaggatttaagtttttgc 22614708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 22647776 - 22647605
Alignment:
Q  12 ttggaagaggttggagaaggatatttaaaagagttaaaccatagaagattggtgcaagtagattcaatcagtattgatggaagaataaaaagttgtcgtg 111  Q
    |||||||| |||| |||| |||||||||  ||||| | ||||||||| ||||| ||||||  |||| | || |||||||||| ||  ||||||||  |||    
T  22647776 ttggaagaagttgcagaacgatatttaactgagttgatccatagaagtttggttcaagtatcttcagttagaattgatggaaaaactaaaagttgctgtg 22647677  T
Q  112 ttcatgatctagtgcatgcgatgatccttgaaaaatatgaggatttaagcttttgccagaatattattgaag 183  Q
    ||||||||||  | |||  |||||||||||||||   ||||||| |||| || ||| || |||||| |||||    
T  22647676 ttcatgatctgatacatatgatgatccttgaaaagagtgaggatataagtttctgcaagcatattagtgaag 22647605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 21938118 - 21938172
Alignment:
Q  103 gttgtcgtgttcatgatctagtgcatgcgatgatccttgaaaaatatgaggattt 157  Q
    |||||||||||||||||||| | | ||  ||||||||||||||| ||||||||||    
T  21938118 gttgtcgtgttcatgatctaatacgtgatatgatccttgaaaaagatgaggattt 21938172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 21946498 - 21946608
Alignment:
Q  12 ttggaagaggttggagaaggatatttaaaagagttaaaccatagaagattggtgcaagtagattcaatcagtattgatggaagaataaaaagttgtcgtg 111  Q
    |||||||| || | |||||||||||||| |||||| | |||||||||  |||| ||||||  |||| | || |||||||| | |   ||| |||||||||    
T  21946498 ttggaagaagtggcagaaggatatttaacagagttgatccatagaagcctggttcaagtatcttcacttagaattgatggtaaagctaaaggttgtcgtg 21946597  T
Q  112 ttcatgatcta 122  Q
    |||||||||||    
T  21946598 ttcatgatcta 21946608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 34990091 - 34990246
Alignment:
Q  12 ttggaagaggttggagaaggatatttaaaagagttaaaccatagaagattggtgcaagtagattcaatcagtattgatggaagaataaaaagttgtcgtg 111  Q
    |||||||| |||| |||| ||||||||| |||||| |  | |||||| ||||||||||||   ||| | || |||||||||| ||  | ||||||| |||    
T  34990091 ttggaagaagttgaagaaagatatttaacagagttgattcgtagaagtttggtgcaagtatcctcagttagcattgatggaaaaactagaagttgttgtg 34990190  T
Q  112 ttcatgatctagtgcatgcgatgatccttgaaaaatatgaggatttaagcttttgc 167  Q
    ||||||||||  | |||  ||||||||||||||| | |||||||||||| ||||||    
T  34990191 ttcatgatctgatacatatgatgatccttgaaaagtgtgaggatttaagtttttgc 34990246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 34976245 - 34976400
Alignment:
Q  12 ttggaagaggttggagaaggatatttaaaagagttaaaccatagaagattggtgcaagtagattcaatcagtattgatggaagaataaaaagttgtcgtg 111  Q
    |||||||| |||| | |||||||||||| |||||| |  | | |||| ||||||||||||   ||| | || ||||||||||     ||||||||| |||    
T  34976245 ttggaagaagttgcaaaaggatatttaacagagttgattcgtcgaagtttggtgcaagtatcctcagttagaattgatggaaagcctaaaagttgttgtg 34976344  T
Q  112 ttcatgatctagtgcatgcgatgatccttgaaaaatatgaggatttaagcttttgc 167  Q
    ||||||||||  | | |  ||||||||||||||| | |||||||||||| ||||||    
T  34976345 ttcatgatctgatacgtatgatgatccttgaaaagtgtgaggatttaagtttttgc 34976400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 34983356 - 34983511
Alignment:
Q  12 ttggaagaggttggagaaggatatttaaaagagttaaaccatagaagattggtgcaagtagattcaatcagtattgatggaagaataaaaagttgtcgtg 111  Q
    |||||||| |||| | |||||||||||| |||||| |  | | |||| ||||||||||||   ||| | || ||||||||||     ||||||||| |||    
T  34983356 ttggaagaagttgcaaaaggatatttaacagagttgattcgtcgaagtttggtgcaagtatcctcagttagaattgatggaaagcctaaaagttgttgtg 34983455  T
Q  112 ttcatgatctagtgcatgcgatgatccttgaaaaatatgaggatttaagcttttgc 167  Q
    ||||||||||  | | |  ||||||||||||||| | |||||||||||| ||||||    
T  34983456 ttcatgatctgatacgtatgatgatccttgaaaagtgtgaggatttaagtttttgc 34983511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 872224 - 872145
Alignment:
Q  104 ttgtcgtgttcatgatctagtgcatgcgatgatccttgaaaaatatgaggatttaagcttttgccagaatattattgaag 183  Q
    ||||||||||||||||||| | ||||   ||||||||||||||| |||||||||||  |||||| || |||||| |||||    
T  872224 ttgtcgtgttcatgatctactacatgatttgatccttgaaaaatttgaggatttaaatttttgcaagcatattagtgaag 872145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 1233501 - 1233422
Alignment:
Q  104 ttgtcgtgttcatgatctagtgcatgcgatgatccttgaaaaatatgaggatttaagcttttgccagaatattattgaag 183  Q
    ||||||||||||||||||| | ||||   ||||||||||||||| |||||||||||  |||||| || |||||| |||||    
T  1233501 ttgtcgtgttcatgatctactacatgatttgatccttgaaaaatttgaggatttaaatttttgcaagcatattagtgaag 1233422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University