View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9723_low_27 (Length: 227)
Name: NF9723_low_27
Description: NF9723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9723_low_27 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 7971320 - 7971546
Alignment:
| Q |
1 |
aacagcgccgagtgcattaaagaaatcaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtactcccttgtgcatacta |
100 |
Q |
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||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7971320 |
aacagagccaagtgcattaaagaaattaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtactcccttgtgtatacta |
7971419 |
T |
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| Q |
101 |
ccagcccaagcaattgtagagtaactgaaacacaaacataaaagatttaaattagcttgtttcaatccacaagttacttataaagagtgatgaaaataaa |
200 |
Q |
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| T |
7971420 |
ccagcccaagcaattgtagagtaactgaaacacaaacataaaagatttaaattagcttgtttcattccacaagttacttataaagagtgatgaaaataaa |
7971519 |
T |
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| Q |
201 |
atgaaatccagaatacaaatttgagcc |
227 |
Q |
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| T |
7971520 |
atgaaatccaaaatacaaatttgagcc |
7971546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 8042393 - 8042188
Alignment:
| Q |
1 |
aacagcgccgagtgcattaaagaaatcaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtactcccttgtgcatacta |
100 |
Q |
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||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8042393 |
aacagagccaagtgcattaaagaaataaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtactcccttgtgtatacta |
8042294 |
T |
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| Q |
101 |
ccagcccaagcaattgtagagtaactgaaacacaaacataaaagatttaaattagcttgtttc--aatccacaagttacttataaagagtgatgaaaata |
198 |
Q |
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| T |
8042293 |
ccagcccaagcaattgtagagtaactgaaacacaaacataaaagatttaaattagcttgtttcatattccacaagttggatataatgagtggtgaaaata |
8042194 |
T |
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| Q |
199 |
aaatga |
204 |
Q |
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|||||| |
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| T |
8042193 |
aaatga |
8042188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 8032489 - 8032363
Alignment:
| Q |
1 |
aacagcgccgagtgcattaaagaaatcaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtactcccttgtgcatacta |
100 |
Q |
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||||| |||||||||||||||||||| |||||| ||| |||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| | |||| |
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| T |
8032489 |
aacagagccgagtgcattaaagaaattaaagactgattctgcagtatttgtagccttgctactatattgtacattttcttgtactcccttgtgtacacta |
8032390 |
T |
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| Q |
101 |
ccagcccaagcaattgtagagtaactg |
127 |
Q |
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| T |
8032389 |
gtagtccaagcaattgtagaataactg |
8032363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 41381767 - 41381888
Alignment:
| Q |
11 |
agtgcattaaagaaatcaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtactcccttgtgcatactaccagcccaag |
110 |
Q |
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|||||||||||||||| |||||||||||||||| |||| || ||||||||| |||||||||||||| || ||||||||||||| | ||||||| |||||| |
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| T |
41381767 |
agtgcattaaagaaattaaagacagatcctgcactagtcgtggctttgctagtatattgtacatttgcttgtactcccttgtgtacactaccaacccaag |
41381866 |
T |
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| Q |
111 |
caattgtagagtaactgaaaca |
132 |
Q |
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| T |
41381867 |
caattgcagagtaactgaaaca |
41381888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 2628 - 2744
Alignment:
| Q |
11 |
agtgcattaaagaaatcaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtactcccttgtgcatactaccagcccaag |
110 |
Q |
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|||||||||||||||| |||||| ||| |||| | || ||||| || |||||||||||||||||||||| |||||||||||| || ||| ||||| |
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| T |
2628 |
agtgcattaaagaaattaaagactgattctgcggccgtcgtagcgtttctactatattgtacattttctattactcccttgtgtgcaccggcagtccaag |
2727 |
T |
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| Q |
111 |
caattgtagagtaactg |
127 |
Q |
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|||| |||||||||||| |
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| T |
2728 |
caatagtagagtaactg |
2744 |
T |
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