View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9723_low_29 (Length: 226)
Name: NF9723_low_29
Description: NF9723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9723_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 27524542 - 27524329
Alignment:
| Q |
1 |
ttctctccaacatacactgcaacgtagccctttctcacttctacagattttaattttgcttgactagaagttactgaaccctttagaatagtgtgtaaac |
100 |
Q |
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| T |
27524542 |
ttctctccaacatacactgcaacgtagccctttctcacttctacagattttgattttgcttgactagacgttactgaaccctttagaatagtgtgtaaac |
27524443 |
T |
|
| Q |
101 |
ggaaacccattttttgttattgttcgagagaagtacag-nnnnnnntctcaaatgtaagaaggaagtaactaaatttttgatgatgcaatgatttgtgct |
199 |
Q |
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|||||||||||||||||||| ||| |||||||| |||| ||||||||||| |||||| |||||||||| |||||| ||||||||| || | || |
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| T |
27524442 |
ggaaacccattttttgttatagtttgagagaagaacagagaaaaaatctcaaatgtatgaaggatgtaactaaatatttgataatgcaatgagtttttct |
27524343 |
T |
|
| Q |
200 |
gttagtgaaggaga |
213 |
Q |
| |
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||| |||||||||| |
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| T |
27524342 |
gtttgtgaaggaga |
27524329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 27503940 - 27503715
Alignment:
| Q |
1 |
ttctctccaacatacactgcaacgtagccctttctcacttctacagattttaattttgcttgactagaagttactgaaccctttagaatagtgtgtaaac |
100 |
Q |
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||||||||||||||||| | ||| ||||||||| |||||||||| |||||| || ||| ||| |||| ||||||||||||||||||||||||||||||| |
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| T |
27503940 |
ttctctccaacatacacggaaacatagccctttttcacttctactgattttgatgttgtttgtctagctgttactgaaccctttagaatagtgtgtaaac |
27503841 |
T |
|
| Q |
101 |
ggaaacccattttttgttattgttcgagagaagtacagnnnnnnnt-ctcaaatgtaagaaggaagtaactaaatttttgatgatgcaatgatttgtgct |
199 |
Q |
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| T |
27503840 |
ggaaacccat-ttttcttattgttcgagtgaagaacagtgaaaaatgatcaaatgtaagatggatgtaattaagtatttgatgatgcaatgaattgtgct |
27503742 |
T |
|
| Q |
200 |
gttagtgaaggagatagtaagtgtatt |
226 |
Q |
| |
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||| |||||||||| || ||||||||| |
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| T |
27503741 |
gtttgtgaaggagagaggaagtgtatt |
27503715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 27514909 - 27514777
Alignment:
| Q |
1 |
ttctctccaacatacactgcaacgtagccctttctcacttctacagattttaattttgcttgactagaagttactgaaccctttagaatagtgtgtaaac |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||| || ||||||| |||| ||||| || || ||||||||| || ||||| |
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| T |
27514909 |
ttctctccaacatacaccgcaacatagccctttctcacttctacagattttgatgttgcttgtctagctgttaccgatcctcttagaatagagtttaaac |
27514810 |
T |
|
| Q |
101 |
ggaaacccattttttgttattgttcgagagaag |
133 |
Q |
| |
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| |||||||||||||||||||||| |||||||| |
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| T |
27514809 |
gaaaacccattttttgttattgtttgagagaag |
27514777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 27508870 - 27508658
Alignment:
| Q |
1 |
ttctctccaacatacactgcaacgtagccctttctcacttctacagattttaattttgcttgactagaagttactgaaccctttagaatagtgtgtaaac |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| ||||||| |
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| T |
27508870 |
ttctctccaacatacactgcaacatagccctttctcacttctatagattttgatttt---------------actgaaccctttagaatagtatgtaaac |
27508786 |
T |
|
| Q |
101 |
ggaaacccattttttgttattgttcgagagaagtac--agnnnnnnntctcaaatgtaagaaggaagtaactaaatttttgatgatgc-aatgatttgtg |
197 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| || || | ||||| |||||||||| |||||||| | |||||||||| ||||| ||||| |
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| T |
27508785 |
ggaaacccat-ttttcttattgttcgagagaagaacagagaaaaaaatatcaaaagtaagaaggatgtaactaagtaattgatgatgctaatgagttgtg |
27508687 |
T |
|
| Q |
198 |
ctgttagtgaaggagatagtaagtgtatt |
226 |
Q |
| |
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||||| |||||||||| || ||||||||| |
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| T |
27508686 |
ctgtttgtgaaggagagaggaagtgtatt |
27508658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 27475701 - 27475832
Alignment:
| Q |
1 |
ttctctccaacatacactgcaacgtagccctttctcacttctacagattttaattttgcttgactagaagttactgaaccctttagaatagtgtgtaaac |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| |||||||||| |||||| || ||| ||| |||| ||||| || || ||||||||| || ||||| |
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| T |
27475701 |
ttctctccaacatacacggcaacatagccctttttcacttctactgattttgatgttgtttgtctagctgttaccgatcctcttagaatagagtttaaac |
27475800 |
T |
|
| Q |
101 |
ggaaacccattttttgttattgttcgagagaa |
132 |
Q |
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|||||||||||||||||||||||| ||||||| |
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| T |
27475801 |
ggaaacccattttttgttattgtttgagagaa |
27475832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 27468449 - 27468582
Alignment:
| Q |
1 |
ttctctccaacatacactgcaacgtagccctttctcacttctacagattttaattttgcttgactagaagttactgaaccctttagaatagtgtgtaaac |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||| || ||||||| |||| ||||| || || ||||||||| || ||| |
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| T |
27468449 |
ttctctccaacatacaccgcaacatagccctttctcacttctacagattttgatgttgcttgtctagctgttaccgatcctcttagaatagagttgaaat |
27468548 |
T |
|
| Q |
101 |
ggaaaccca-ttttttgttattgttcgagagaag |
133 |
Q |
| |
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||||||||| ||||||||||||||| |||||||| |
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| T |
27468549 |
ggaaacccatttttttgttattgtttgagagaag |
27468582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 27497447 - 27497576
Alignment:
| Q |
4 |
tctccaacatacactgcaacgtagccctttctcacttctacagattttaattttgcttgactagaagttactgaaccctttagaatagtgtgtaaacgga |
103 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||| || |||||| |||| ||||||||| || ||||| ||| |||||||||| |
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| T |
27497447 |
tctccaacatacactgcaacatagccctttggaacttctacagattttgatgatgcttgtctagcagttactgatgcccttagagtagcatgtaaacgga |
27497546 |
T |
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| Q |
104 |
aacccattttttgttattgttcgagagaag |
133 |
Q |
| |
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||||||||||| ||| ||||| |||||||| |
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| T |
27497547 |
aacccatttttagttcttgtttgagagaag |
27497576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 27489978 - 27489928
Alignment:
| Q |
1 |
ttctctccaacatacactgcaacgtagccctttctcacttctacagatttt |
51 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| |||||| | |||||| |
|
|
| T |
27489978 |
ttctctccaacatacactacaacatagccctttcttacttctgctgatttt |
27489928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 27479005 - 27479037
Alignment:
| Q |
1 |
ttctctccaacatacactgcaacgtagcccttt |
33 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |
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| T |
27479005 |
ttctctccaacatacactgcaacatagcccttt |
27479037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 27486065 - 27486097
Alignment:
| Q |
1 |
ttctctccaacatacactgcaacgtagcccttt |
33 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
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|
| T |
27486065 |
ttctctccaacatacactgcaacatagcccttt |
27486097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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