View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9723_low_3 (Length: 481)
Name: NF9723_low_3
Description: NF9723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9723_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 54986566 - 54986991
Alignment:
| Q |
1 |
agagtgtgttctatcacttgtacaatcaagtctcttatatgtctctggatcagatttctccattaacatttagcatagggaacacgatgaagagaatctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54986566 |
agagtgtgttctatcacttgtacaatcaagtctcttatatgtctctggatcagatttctccattaacatttagcatagggaacacgatgaagagaatctc |
54986665 |
T |
|
| Q |
101 |
ggttattgtctcttcgatcattatcttccacacaccaattcagccaaacaatgcccttggtgctgcaattgcaatcctcggcaccttcctctattcacag |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54986666 |
ggttattgtctcttcgatcattatcttccacacaccaattcagccaaacaatgcccttggtgctgcaattgcaatcctcggcaccttcctctattcacag |
54986765 |
T |
|
| Q |
201 |
gtgcattcctttttccttctatttttgttttcttattaagtataaccattcactattttttatgttcgttcattttacatatacatgtgcaacatgtgcg |
300 |
Q |
| |
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| T |
54986766 |
gtgcattcc-ttttccttctatttttgttttcttattaagtataaccattcactattttttatgctcgttcattttatatatacatgtgca--------- |
54986855 |
T |
|
| Q |
301 |
tgcgcgcacgtgtgtcaaaaataaaactatatttctcaatacttgagaccaaactaatctgtttgtttctttttaattatttctacaggccaaacagtaa |
400 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
54986856 |
--cgcgcacgtgtgtcaacaataaaactatatttctcaatacttgtgacgaaactaatctgtttgttactttttaattatttctacaggccaaacagtaa |
54986953 |
T |
|
| Q |
401 |
tgtgtagtttagaagctgctatatctatatgcaagaca |
438 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||| |
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| T |
54986954 |
tgactagtttagaagctgctatatctatatgcaagaca |
54986991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 7883891 - 7884096
Alignment:
| Q |
3 |
agtgtgttctatcacttgtacaatcaagtctcttatatgtctctggatcagatttctccattaacatttagcatagggaacacgatgaagagaatctcgg |
102 |
Q |
| |
|
||||||||||| || || || |||||||| || || |||||||| |||||||||||||| ||||||||||||||||| || || ||||||||||| || | |
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| T |
7883891 |
agtgtgttctaccatttatataatcaagtgtcatacatgtctcttgatcagatttctcccttaacatttagcataggaaatacaatgaagagaatttctg |
7883990 |
T |
|
| Q |
103 |
ttattgtctcttcgatcattatcttccacacaccaattcagccaaacaatgcccttggtgctgcaattgcaatcctcggcaccttcctctattcacaggt |
202 |
Q |
| |
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| || |||||||| ||||||||||| ||||||||| |||| || | |||||| ||||| ||||| |||||||| || ||||||||| ||||||||||||| |
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| T |
7883991 |
taatagtctcttccatcattatctttcacacaccacttcaacccatcaatgctcttggagctgccattgcaattcttggcaccttcatctattcacaggt |
7884090 |
T |
|
| Q |
203 |
gcattc |
208 |
Q |
| |
|
| |||| |
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|
| T |
7884091 |
gaattc |
7884096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 18397711 - 18397862
Alignment:
| Q |
21 |
tacaatcaagtctcttatatgtctctggatcagatttctccattaacatttagcatagggaacacgatgaagagaatctcggttattgtctcttcgatca |
120 |
Q |
| |
|
|||||||| || ||||| ||||| ||||| |||| ||||| ||||||||||||| || ||||| ||||| | || || || || || ||||| || | |
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|
| T |
18397711 |
tacaatcaggtgtcttacatgtcgttggatgagatctctcccctaacatttagcattggaaacaccatgaaacgtatatctgtcatagtatcttcaatta |
18397810 |
T |
|
| Q |
121 |
ttatcttccacacaccaattcagccaaacaatgcccttggtgctgcaattgc |
172 |
Q |
| |
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| |||||||| |||||||||||||| |||||| ||||| || |||||||| |
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|
| T |
18397811 |
tcatcttccatacaccaattcagcctgtcaatgctcttggagccgcaattgc |
18397862 |
T |
|
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