View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9723_low_30 (Length: 214)
Name: NF9723_low_30
Description: NF9723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9723_low_30 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 45282570 - 45282783
Alignment:
| Q |
1 |
atatcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactgtttcttcattcataagtacataatta |
100 |
Q |
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| T |
45282570 |
atatcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactctttcttcattcataagtaaataatta |
45282669 |
T |
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| Q |
101 |
attaaataaaataaaaatgttttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtcttgacaccagcagcaaagctctttctacc |
200 |
Q |
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| T |
45282670 |
attaaataaaataaaaaagttttgatcgatgataattgaattaagtaccgaaggtggcggtttgcatggtcttgacaccagcagcaaagctctttctacc |
45282769 |
T |
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| Q |
201 |
ggtgacaatggtcc |
214 |
Q |
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||||||||||||| |
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| T |
45282770 |
agtgacaatggtcc |
45282783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 45293957 - 45294170
Alignment:
| Q |
3 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcata--tactgtttcttcattcataag-tacataatt |
99 |
Q |
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| T |
45293957 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaatt |
45294056 |
T |
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| Q |
100 |
aattaaataaaataaaaatgttttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtcttgacaccagcagcaaagctctttctac |
199 |
Q |
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| T |
45294057 |
tattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttcttc |
45294156 |
T |
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| Q |
200 |
cggtgacaatggtc |
213 |
Q |
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| T |
45294157 |
cggtaacaatggtc |
45294170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 45302917 - 45303130
Alignment:
| Q |
3 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcata--tactgtttcttcattcataag-tacataatt |
99 |
Q |
| |
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| T |
45302917 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaatt |
45303016 |
T |
|
| Q |
100 |
aattaaataaaataaaaatgttttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtcttgacaccagcagcaaagctctttctac |
199 |
Q |
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| T |
45303017 |
tattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttcttc |
45303116 |
T |
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| Q |
200 |
cggtgacaatggtc |
213 |
Q |
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| T |
45303117 |
cggtaacaatggtc |
45303130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 45274330 - 45274542
Alignment:
| Q |
4 |
tcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactgtttcttcattcataag-tacataattaat |
102 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||||||| ||||||| || | ||||||| |
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| T |
45274330 |
tcttttcaatgcgagttatgttttcttcaaaaataaattttgagagtgatgctactttttcttatatactctttcttcaatcataaggtatacaattaat |
45274429 |
T |
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| Q |
103 |
taaataaaataaaaat-gttttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtcttgacaccagcagcaaagctctttctaccg |
201 |
Q |
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| T |
45274430 |
caaataaaataaaaaaagctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttctaccg |
45274529 |
T |
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| Q |
202 |
gtgacaatggtcc |
214 |
Q |
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| T |
45274530 |
gtgacaatggtcc |
45274542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 45270797 - 45270943
Alignment:
| Q |
1 |
atatcttttcaatgttagtta-tgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactgtttcttcattcataa-gtacataat |
98 |
Q |
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||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| ||| |||| ||| |||| | ||||||||||||| ||||| ||| |
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| T |
45270797 |
atatcttttcaatgtgagttaatgtttttttcaaaaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggtacacaat |
45270896 |
T |
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| Q |
99 |
taattaaataaaataaaaatgttttgatcgatgataattgaattacgtac |
148 |
Q |
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|||||||||||||||||| | |||||||||| |||| |||||||||||| |
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| T |
45270897 |
taattaaataaaataaaa--gctttgatcgat-ataactgaattacgtac |
45270943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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