View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9723_low_4 (Length: 455)
Name: NF9723_low_4
Description: NF9723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9723_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Complemental strand, 10467382 - 10466957
Alignment:
| Q |
13 |
aaaggtgttaaagctaagaaaggtggaaattgtgcatgggatcttaggtggagagtggagttacgccaatgagaagtagagttggtacagtatcttttaa |
112 |
Q |
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| T |
10467382 |
aaaggttttaaagctaagaaaggtggaaattgtgcatgggatcttaggtggagagtggagttacgccaatgagaagtagagttggtacagtatcttttaa |
10467283 |
T |
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| Q |
113 |
caaattgaggatgnnnnnnngtaagggtgatggtagagatgacattttttggacttaggatttatcaaattgaggatagttattattggtagacttctta |
212 |
Q |
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| T |
10467282 |
caaattgaagatgtttttttgtaagggtgatggtagagatgacattttttggacttaggattcatcaaattgaggatagttattattggtagacttctta |
10467183 |
T |
|
| Q |
213 |
cttgcggaaacataactagaaggggagtgttggtggaaggagttagttcgaattgtgtattttgaccggaaaatcttgaggttaaggataatttgtttta |
312 |
Q |
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| T |
10467182 |
tttgcggaaacataactagaaggggagtgttggtggaaggagttggttcgaattgtgtattttgtccgaaaaatcttgagattaaggataatttgtttta |
10467083 |
T |
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| Q |
313 |
tagatgtagtattactggaagagtttaatattcgatttttaagtggatcgaaatgggagaatattttaactcgaaaatagtctcttcttgaatatttatc |
412 |
Q |
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| T |
10467082 |
tagatgtagcattgctggaagggtttaatactcgatttttaagtggatcgaaatgggagtatattttaactcgaaaatagtctcttcttgaatatttatc |
10466983 |
T |
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| Q |
413 |
atgaaagatttgagaggctcgaaatg |
438 |
Q |
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| T |
10466982 |
atgaaagatttgagaggctcaaaatg |
10466957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 360
Target Start/End: Original strand, 2017130 - 2017191
Alignment:
| Q |
299 |
gataatttgttttatagatgtagtattactggaagagtttaatattcgatttttaagtggat |
360 |
Q |
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| T |
2017130 |
gataatttgttttgtagatgtaattttgttggaaaggtttgatattcgatttttaagtggat |
2017191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 6700545 - 6700668
Alignment:
| Q |
198 |
ttggtagacttcttacttgcggaaacataactagaaggggagtgttggtggaaggagttagttcgaattgtgtattttgaccggaaaatcttgaggttaa |
297 |
Q |
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| T |
6700545 |
ttggaagacttcgtactcgcataaacttaactagaaggagagtgttgg-ggaaggagttagtttgaattgtgtgttttgtctggacaatcttgaggtgga |
6700643 |
T |
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| Q |
298 |
ggataatttgttttatagatgtagt |
322 |
Q |
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||||||||| |||| || ||||||| |
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| T |
6700644 |
ggataatttattttgtatatgtagt |
6700668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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