View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9723_low_5 (Length: 396)
Name: NF9723_low_5
Description: NF9723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9723_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 10201074 - 10200702
Alignment:
| Q |
19 |
ttgagtatcaaaggaaaggaagaaggatactaaggaggcatgtcaagtttgttatcagtgcacagctttccaagtcattttcattcaccttcggacttga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10201074 |
ttgagtatcaaaggaaaggaagaaggatactaaggaggcatgtcaagtttgttatcagtgcacagctttccaagtcattttcattcaccttcggacttga |
10200975 |
T |
|
| Q |
119 |
ttctccggtatcactctcttatacttatgatttatagtaattctaatatgttatgttattatagttttaactttcaagttgcaagtttatttataatgtt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10200974 |
ttctccggtatcactctcttatacttatgatttatagtaattctaatatgttatgttattatagttttaactttcaagttgcaagtttatttataatgtt |
10200875 |
T |
|
| Q |
219 |
tagtttctgtcacttgaaataattaaataagacactttgcggcttagtttttctgtcatttgaattataaaatagtgtgtttgatgttgatcatagatta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10200874 |
tagtttctgtcacttgaaataattaaataagacactttgcggcttagtttttatgtcatttgaattataaaatagtgtgtttgatgttgatcatagatta |
10200775 |
T |
|
| Q |
319 |
tacttccttgttgaggaatttagtaataaaaagaaaattctatgaaattaaacttttagctggtttgtctgtg |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
10200774 |
tacttccttgttgaggaatttagtaataaaaagaaaattctatgaaattaaacctttagctggtttgtgtgtg |
10200702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University