View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9723_low_9 (Length: 356)
Name: NF9723_low_9
Description: NF9723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9723_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 346
Target Start/End: Original strand, 55178566 - 55178896
Alignment:
| Q |
16 |
caattaaaaacagtaaaattgagaattcataaataagaactttcttcatgtatggtaaactagtactaattagcagcagtgatgttatgagtctgacctg |
115 |
Q |
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| T |
55178566 |
caattaaaaacagtaaaattgagaattcataaataagaactttcttcatgtatggtaaactagtactaattagcagcagtgatgttatgagtccgacctg |
55178665 |
T |
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| Q |
116 |
aagagaattgacaagtgcaagagttgagaacctcaaagataaaccacttgcagctactgaaactaataacatttttatagctctggccctcaatttgaga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55178666 |
aagagaattgacaagtgcaagagttgagaacctcaaagataaaccacttgcagctactgaaactaataacatttttatagctctggccctcaatttgaga |
55178765 |
T |
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| Q |
216 |
tgaactgtgtcgattgttattatatttgtgtgttgagcgatccggtaagttcattacccattgtacaacagacatgtcccttgaaatttctgtatgcatc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55178766 |
tgaactgtgtcgattgttattatatttgtgtgttgagcgatccggtaagttcattacccattgtacaacagacatgtcccttgaaatttctgtatgcatc |
55178865 |
T |
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| Q |
316 |
ctgcggagaagtggccaaccaagcttctgtg |
346 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
55178866 |
ctgcggagaagtggccaaccaagcttctgtg |
55178896 |
T |
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