View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9724_high_3 (Length: 216)
Name: NF9724_high_3
Description: NF9724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9724_high_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 40198396 - 40198188
Alignment:
| Q |
8 |
aatagataatgattacatgtgagcgaagaagttccttgtatgtagtgatttctctcaaagcaatggtaaatttgttcattacaggtcctgggagtagtga |
107 |
Q |
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| T |
40198396 |
aatagataatgattacctgtgagcgaagaagttccttgtatgtagtgatttctctcaaagcaatggtaaatttgttcattacaggtcctgggagtagtga |
40198297 |
T |
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| Q |
108 |
aaacaaaatatattaaaatgaagagaaaagataatgtttaattaaacggattatatggcttacctcccaatgcaacgaaatgaggatcagtatggcctcc |
207 |
Q |
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| T |
40198296 |
aaacaaaatatattaaaatgaagagaaaggataatgtttaattaaacggattatatggcttacctcccaatgcaacgaaatgaggatcagtatggcctcc |
40198197 |
T |
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| Q |
208 |
tccaaaact |
216 |
Q |
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||||||||| |
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| T |
40198196 |
tccaaaact |
40198188 |
T |
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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 45083984 - 45083905
Alignment:
| Q |
19 |
attacatgtgagcgaagaagttccttgtatgtagtgatttctctcaaagcaatggtaaatttgttcattacaggtcctgg |
98 |
Q |
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| T |
45083984 |
attacctgtgaacgaagaagttccttgtgtgtactgatttctctcaaagcaatagagaatttggccattacaggtcctgg |
45083905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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