View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9724_low_1 (Length: 326)
Name: NF9724_low_1
Description: NF9724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9724_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 92 - 318
Target Start/End: Original strand, 43072192 - 43072417
Alignment:
| Q |
92 |
ctgaaaatgacctaaacaactctaattgcagttaactactattcgctctttttgtggcagcaatcagctgccgttccaaatatacacatgtaaggtnnnn |
191 |
Q |
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| T |
43072192 |
ctgaaaatgacctaaacaactctaactgcagttaactactgttcgctctttt-gcggcagcaattagctgccgttccaaatatacacatgtaaggtaaaa |
43072290 |
T |
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| Q |
192 |
nnntccaacgacacttaatgccttagagcatgacaattctagaacaaccttttctctctgggtaattgggttaaatgaagaaggatttttccagctatgc |
291 |
Q |
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| T |
43072291 |
aaatccaatgacacttaatgccttagagcatgacaattctagaacaaccttttctctctgggtaattgggttaaatgaagaaggatttttccagctatgc |
43072390 |
T |
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| Q |
292 |
aggcatgttaatactgattcctttgct |
318 |
Q |
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||||||||||||||||||||||||||| |
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| T |
43072391 |
aggcatgttaatactgattcctttgct |
43072417 |
T |
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Back To:
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 40299766 - 40299815
Alignment:
| Q |
269 |
aagaaggatttttccagctatgcaggcatgttaatactgattcctttgct |
318 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40299766 |
aagaatgatttttccagctacgcaggcatgttaatactgattcctttgct |
40299815 |
T |
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