View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9724_low_3 (Length: 259)
Name: NF9724_low_3
Description: NF9724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9724_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 252
Target Start/End: Original strand, 8148272 - 8148516
Alignment:
| Q |
7 |
tgtgtgacatttaatttttctgcaaatagcttttagctcagttgttcataacttaagttgataaaatgcttgagtcgtaaacatagcgatgtgaatgaat |
106 |
Q |
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| T |
8148272 |
tgtgtgacatttagtatttctgcaaatagcttt-agctcagttgttcataacttaagttgataaaatgcttgagtcgtaaacatagcgatgtgaatgaat |
8148370 |
T |
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| Q |
107 |
gagagacgaggatttcaactgtttgataattctgtcccctcttgacttccttgctgattgttgtttagttacatatattatgcctcgagtctctaaaaac |
206 |
Q |
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| T |
8148371 |
gagagacgaggatttcaactgtttgataattctgtcccctcttgacttccttgctgattgttggttagttacatatattatgcctagagtctctaaacaa |
8148470 |
T |
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| Q |
207 |
atgtttacactagcgggctgtttccagaagcagggtggctgtggta |
252 |
Q |
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| T |
8148471 |
atgtttacactagcgggctgtttccagaagcagggtggctgtggta |
8148516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 252
Target Start/End: Original strand, 8175308 - 8175552
Alignment:
| Q |
7 |
tgtgtgacatttaatttttctgcaaatagcttttagctcagttgttcataacttaagttgataaaatgcttgagtcgtaaacatagcgatgtgaatgaat |
106 |
Q |
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| T |
8175308 |
tgtgtgacatttagtatttctgcaaatagcttt-agctcagttgttcataacttaagttgataaaatgctcgggtcgtatacatcgcaatgtgtatgaat |
8175406 |
T |
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| Q |
107 |
gagagacgaggatttcaactgtttgataatt-ctgtcccctcttgacttccttgctgattgttgtttagttacatatattatgcctcgagtctctaaaaa |
205 |
Q |
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| T |
8175407 |
gagagatgaggattccaactgtttgatatttgctgtcccctcgtgacttccttgctgattgttgtttagttacatatattatgaat-gagtctctaaaca |
8175505 |
T |
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| Q |
206 |
catgtttacactagcgggctgtttccagaagcagggtggctgtggta |
252 |
Q |
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| T |
8175506 |
aatatttaccctagcaggcgatttccagaagcagagggggtgtggta |
8175552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 7 - 235
Target Start/End: Original strand, 8169095 - 8169327
Alignment:
| Q |
7 |
tgtgtgacatttaatttttctgcaaatagcttttagctcagttgttcataacttaagttgataaaatgcttgagtcgtaaa-----catagcgatgtgaa |
101 |
Q |
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| T |
8169095 |
tgtgttacatttagtatttctgcaaatagcatc-agctcagttgttcataacttaagtttataaaatgcttgagtcgtaacgtaagcatagcgatgtgaa |
8169193 |
T |
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| Q |
102 |
tgaatgagagacgaggatttcaactgtttgataattctgtcccctcttgacttccttgctgattgttgtttagttacatatattatgcctcgagtctcta |
201 |
Q |
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| T |
8169194 |
tgaatgagagacgaggatttcaactgtttgatattaatgtcccctcgtgacttccttgctgattgttggttagttacatatattatgcctagagtctcta |
8169293 |
T |
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| Q |
202 |
aaaacatgtttacactagcgggctgtttccagaa |
235 |
Q |
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| T |
8169294 |
aacaaatatttacactaacaggcgatttccagaa |
8169327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 8150841 - 8150927
Alignment:
| Q |
96 |
tgtgaatgaatgagagacgaggatttcaactgtttgataattctgtcccctcttgacttccttgctgattgttgtttagttacatat |
182 |
Q |
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| T |
8150841 |
tgtgtatgaatgagagatgaggatttgaactgtttgattttgctttaccctcctgatttccttgccgattgttgtttaatgacatat |
8150927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 8177293 - 8177398
Alignment:
| Q |
96 |
tgtgaatgaatgagagacgaggatttcaactgtttgataattctgtcccctcttgacttccttgctgattgttgtttagttacatatat-tatgcctcga |
194 |
Q |
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| T |
8177293 |
tgtgtatgaatgagaggtgaggatttgaactgtttgatatcactttgcctgctttatttccttgccgattgttgtttagttacatatttagatgcctcga |
8177392 |
T |
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| Q |
195 |
gtctct |
200 |
Q |
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| T |
8177393 |
gtctct |
8177398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 8182932 - 8183011
Alignment:
| Q |
103 |
gaatgagagacgaggatttcaactgtttgataattctgtcccctcttgacttccttgctgattgttgtttagttacatat |
182 |
Q |
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| T |
8182932 |
gaatgagagatgaggatttgaactgtttgattttgctttaccctcctgatttccttgccgattgttgtttaatgacatat |
8183011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 8144620 - 8144706
Alignment:
| Q |
96 |
tgtgaatgaatgagagacgaggatttcaactgtttgataattctgtcccctcttgacttccttgctgattgttgtttagttacatat |
182 |
Q |
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| T |
8144620 |
tgtgtatgaatgagagatgaggatttgaactgtttgattttgctttaccctcctgatttccttgcctattgttgtttaatgacatat |
8144706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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