View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9724_low_4 (Length: 249)
Name: NF9724_low_4
Description: NF9724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9724_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 38265890 - 38265645
Alignment:
| Q |
1 |
atcaaaaagactactcaaagaatcattatcatataaattaatcctctccaagaaattaagagtttgatatgtaaaacgatcaacgacagaaacacccaaa |
100 |
Q |
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| T |
38265890 |
atcaaaaagactactcaaagaatcattatcatataaattaatcctctccaagaaattaagagtttgatatgtaaagcgatcaacgacagaaacacccaaa |
38265791 |
T |
|
| Q |
101 |
tccgaatcaaaatgatgtgaatacgaactctctcctttcaaactacttccaatagctaaaacaccaggtgaacgaaggtctgagaaaagagtagcagctt |
200 |
Q |
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||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38265790 |
tccaaatcagaatgatgtgaatacgaactctctcctttcacactacttccaatagctaaaacaccaggtgaacgaaggtctgagaaaagagtagcagctt |
38265691 |
T |
|
| Q |
201 |
gacaagtatccaccattatcaacaactccttaaacctatgcttctc |
246 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
38265690 |
gacaagtatccaccattatcaacaactccttaaacctgtgattctc |
38265645 |
T |
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