View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9724_low_6 (Length: 227)
Name: NF9724_low_6
Description: NF9724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9724_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 29235570 - 29235379
Alignment:
| Q |
17 |
agacaagtgtttgaaaccatgaaaacatggtttcaatattctcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggcttc |
116 |
Q |
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| T |
29235570 |
agacaagtgtttgaaacca----aacatggtttcaatattgtcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggcttc |
29235475 |
T |
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| Q |
117 |
ctttacttgttgatttccctcatatgtagagcaaattaaatttgtaaattgtttcaatatcctcaaggaagagaagagtattcaccatgatacttt |
212 |
Q |
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||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29235474 |
ctttacttgttgatttccctcatatgtagagcatagtagatttgtaaattgtttcaatatcctcaaggaagagaagagtattcaccatgatacttt |
29235379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 29348869 - 29348678
Alignment:
| Q |
17 |
agacaagtgtttgaaaccatgaaaacatggtttcaatattctcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggcttc |
116 |
Q |
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| T |
29348869 |
agacaagtgtttgaaacca----aacatggtttcaatattgtcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggcttc |
29348774 |
T |
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| Q |
117 |
ctttacttgttgatttccctcatatgtagagcaaattaaatttgtaaattgtttcaatatcctcaaggaagagaagagtattcaccatgatacttt |
212 |
Q |
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| T |
29348773 |
ctttacttgttgatttccctcatatgtagagcatagtagatttgtaaattgtttcaatatcctcaaggaagagaagagtattcaccatgatacttt |
29348678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 16801190 - 16801067
Alignment:
| Q |
15 |
agagacaagtgtttgaaaccatgaaaacatggtttcaatattctcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggct |
114 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||| |||||| ||| |||||||| |||||| ||| ||| || |
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| T |
16801190 |
agagacaagtgtttgaaaccttgaaaacatgatttcaatatcttcatcatccttcgtttagaatagttcatattgttggactagaagagttgcctttcct |
16801091 |
T |
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| Q |
115 |
tcctttacttgttgatttccctca |
138 |
Q |
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||| | |||| ||||||||||||| |
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| T |
16801090 |
tccatcacttattgatttccctca |
16801067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 16840476 - 16840353
Alignment:
| Q |
15 |
agagacaagtgtttgaaaccatgaaaacatggtttcaatattctcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggct |
114 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||| |||||| ||| |||||||| |||||| ||| ||| || |
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| T |
16840476 |
agagacaagtgtttgaaaccttgaaaacatgatttcaatatcttcatcatccttcgtttagaatagttcatattgttggactagaagagttgcctttcct |
16840377 |
T |
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| Q |
115 |
tcctttacttgttgatttccctca |
138 |
Q |
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||| | |||| ||||||||||||| |
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| T |
16840376 |
tccatcacttattgatttccctca |
16840353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 18085857 - 18085723
Alignment:
| Q |
15 |
agagacaagtgtttgaaaccatgaaaacatggtttcaatattctcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggct |
114 |
Q |
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|||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||||| | |||||||| ||||||||| |||| || |
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| T |
18085857 |
agagacaagtgtttgaaaccttgaaaccatagtttcaatatcttcatcatccttcattttgaatagtttgtattgttggactagaagattttccttgact |
18085758 |
T |
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| Q |
115 |
tcctttacttgttgatttccctcatatgtagagca |
149 |
Q |
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|| || ||||||||||||||||||||||| ||||| |
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| T |
18085757 |
tcattcacttgttgatttccctcatatgtggagca |
18085723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 140
Target Start/End: Complemental strand, 11012641 - 11012542
Alignment:
| Q |
41 |
acatggtttcaatattctcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggcttcctttacttgttgatttccctcata |
140 |
Q |
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|||||| |||||||| |||||||||||||| |||| | | ||| |||||||| | |||||||||||| ||||||| |||||||||||||||||||| |
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| T |
11012641 |
acatggcttcaatatcgccatcatccttcattatgaacaactcatattgttggactataagatttgtcttatcttccttcacttgttgatttccctcata |
11012542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 27518676 - 27518616
Alignment:
| Q |
14 |
cagagacaagtgtttgaaaccatgaaaacatggtttcaatattctcatcatccttcatttt |
74 |
Q |
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|||| ||||| |||||||||| |||| ||||| ||||||||| ||||| ||||||||||| |
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| T |
27518676 |
cagatacaagagtttgaaaccttgaatacatgatttcaatatcttcatcctccttcatttt |
27518616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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