View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9725_2 (Length: 969)
Name: NF9725_2
Description: NF9725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9725_2 |
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Alignment Details
Target: chr6 (Bit Score: 821; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 821; E-Value: 0
Query Start/End: Original strand, 21 - 955
Target Start/End: Original strand, 3939875 - 3940808
Alignment:
| Q |
21 |
atgttgctacatgtttatgataacagaattctgcatacctagtcattagaggtatgaaaaccttgcatcttcgtgtacaacatcaaaatgcaagtcggca |
120 |
Q |
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| T |
3939875 |
atgttgctacatgtttatgataacagaattctgcatacctagtcattagaggtatgaaaaccttgcatcttcgtgtacaacatcaaaattcaa--cagca |
3939972 |
T |
|
| Q |
121 |
atgaagatggcccaacttttagagacacatcctaaggtatcttggcattgatatagacaatgtctagtttatatcttcaacaatgatgttcaagatataa |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3939973 |
atgaagatggcccaacttttagagacacatcctaaggtatcttggcattgatatagacaatgtctagtttatatcttcaacaatgatgttcaagatataa |
3940072 |
T |
|
| Q |
221 |
tgcaattcatcgacgatgactattttcaatgttattgataggtgacacgagtctactatcccggcttgccaagtcatcccgaatatgccctcgccaagag |
320 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3940073 |
tgcaattcatcgacgatgactattttcgatgttattgataggtgacacgagtctactatcccggcttgccaagtcatcccgaatatgccctcgccaagag |
3940172 |
T |
|
| Q |
321 |
gcaaatgactggttttggaggtgttgtctgttttgatgtatggtttgttcttttaccttgatttgcannnnnnnnn-ctttctaaagtgagtaatagttc |
419 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3940173 |
gcaaatgactggttttggaggtgttgtctgttttgatgtatggtttgttcttttaccttgatttgcattttttttttctttctaaagtgagtaatagttc |
3940272 |
T |
|
| Q |
420 |
atctgttgaatgactatacactaacaatttaaaacattctttcacacgatcattgaatttgacgattgtgtaaagaaaaggttttaaattgtcagtgtat |
519 |
Q |
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||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3940273 |
atccgttgaatgactatacactgacaatttaaaacattctttcacacgatcatcgaatttgacgattgtgtaaaaaaaaggttttaaattgtcagtgtat |
3940372 |
T |
|
| Q |
520 |
agtcattaaaccgataaactacttttatatttgaagtaaactatgtttctcatttaaattatgtttttggtgttattattatttagtaaatttggattat |
619 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3940373 |
agtcattaaaccgataaactacttttatatttgaagtaaattatgtttttcatttaaattatgtttttggtgttattattatttagtaaatttggattat |
3940472 |
T |
|
| Q |
620 |
gatgtttctaatcatgcagattgatggagatataatgaggacgataaagtttgttgattcgttgaaaatcccatacattgctccatcctttggtggtgtt |
719 |
Q |
| |
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| T |
3940473 |
gatgtttctaatcatgcagattgatggagatataatgaggacgataaagtttgttgattcattgaaaatcccatacattgctccatcctttggtggtgtt |
3940572 |
T |
|
| Q |
720 |
gagagtgttgtgaatcagccagcaatcatgtcttattggtatttgattgaatctttttcaaatgtatgatttaactttatccattatagaggaaatatgt |
819 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3940573 |
gagagtgttgtgaatcagccagcaatcatgtcttattggtatttgattgaatctttttcaaatgtatgatttaactttatccattatagaggaaatatgt |
3940672 |
T |
|
| Q |
820 |
atattttaatatattcnnnnnnnattttgctatagggatcttccaaggaaagaaagggaaaaatatagaatttatgataacactgtccgtttctgctttg |
919 |
Q |
| |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3940673 |
atattttaatattttctttttttattttgctatagggatcttccaaggaaagaaagggaaaaatatagaatttatgataacaccgtccgtttctgctttg |
3940772 |
T |
|
| Q |
920 |
gagttgaaggctatgaagatttaaaggatgatgtcc |
955 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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|
| T |
3940773 |
gagttgaaggctatgaagatttaaaggatgatgtcc |
3940808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 41 - 169
Target Start/End: Original strand, 2983888 - 2984014
Alignment:
| Q |
41 |
taacagaattctgcatacctagtcattagaggtatgaaaaccttgcatcttcgtgtacaacatcaaaatgcaagtcggcaatgaagatggcccaactttt |
140 |
Q |
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||||||||| ||||||||||| |||| ||||| |||||||| |||||||||||||||| || || ||| ||| | | ||||| ||||||| ||||||| |
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| T |
2983888 |
taacagaatgctgcatacctattcatcagaggcatgaaaacgctgcatcttcgtgtacagcaacagaattcaa--ccggaatgaggatggccaaactttt |
2983985 |
T |
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| Q |
141 |
agagacacatcctaaggtatcttggcatt |
169 |
Q |
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|||| ||||||| |||||| | ||||||| |
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| T |
2983986 |
agaggcacatcccaaggtaccatggcatt |
2984014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 271 - 356
Target Start/End: Original strand, 2984649 - 2984734
Alignment:
| Q |
271 |
gtctactatcccggcttgccaagtcatcccgaatatgccctcgccaagaggcaaatgactggttttggaggtgttgtctgttttga |
356 |
Q |
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||||||||||| ||||||||||||||||| ||| | | || |||| |||||| |||||||||||||||||||| ||| ||||||| |
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| T |
2984649 |
gtctactatccaggcttgccaagtcatcctgaacacgagcttgccatgaggcagatgactggttttggaggtgtggtcagttttga |
2984734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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