View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9725_5 (Length: 466)
Name: NF9725_5
Description: NF9725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9725_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 26 - 453
Target Start/End: Original strand, 51273692 - 51274120
Alignment:
| Q |
26 |
actttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctcaaagcgtaaacttctcatttcgttctcaccaaatctta |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
51273692 |
actttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctcaaagcgtaaacttctcatttcgttctcaccaaatctca |
51273791 |
T |
|
| Q |
126 |
atctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaagnnnnnnncatgtcttatattc |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
51273792 |
atctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaagaaaaaaacatgtcttatattc |
51273891 |
T |
|
| Q |
226 |
gagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaa |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51273892 |
gagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaa |
51273991 |
T |
|
| Q |
326 |
cttccactccctccaccgccgggaaccggtcacaataaacgtgaccg-gtactcgaaggccttgtttgtgaaccttattatagcatcggagaaagcacaa |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51273992 |
cttccactccctccaccgccgggaaccggtcacaataaacgtgaccgtgtactagaaggctttgtttgtgaaccttattatagcatcggagaaagcacaa |
51274091 |
T |
|
| Q |
425 |
agaaagtatctttcaaccatcacaggttc |
453 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
51274092 |
agaaagtatctttcaaccatcacaggttc |
51274120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 48403187 - 48403146
Alignment:
| Q |
60 |
agaaaaaatggcacttcaattttatctcaaagcgtaaacttc |
101 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48403187 |
agaaagaatggcacttcaattttatctcaaagtgtaaacttc |
48403146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 7e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 102 - 398
Target Start/End: Original strand, 14907797 - 14908094
Alignment:
| Q |
102 |
tcatttcgttctcaccaaatcttaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataac |
201 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||| |||||||| ||||||||||| |
|
|
| T |
14907797 |
tcatttcgttctcacccaatctcaatctttctactcctgaaaaccaaatttacttgagttttctttgccgaaaattcgaccctaaactcgacaatataac |
14907896 |
T |
|
| Q |
202 |
aagnnnnnnncatgtcttatattcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaac |
301 |
Q |
| |
|
||| |||||||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
14907897 |
aagaaaataaaatgtcttatattcgagaattgttggatcttccaatggcttgtttctgtgcaagaaaaccacacgtagtagagtctaccatgtctgcaac |
14907996 |
T |
|
| Q |
302 |
atcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaataaacgtgaccg-gtactcgaaggccttgtttgtgaacc |
398 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||| ||||| |||| ||| | |||||||| |||| |||||| ||||||| ||||| |
|
|
| T |
14907997 |
atcctcacaaaagataggatcaaatttccactccctccaccgctacgaaccagtcataatgagcgtgaccgtgtacatgaaggctttgtttgcgaacc |
14908094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 26 - 244
Target Start/End: Complemental strand, 5051674 - 5051458
Alignment:
| Q |
26 |
actttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctcaaagcgtaaacttctcatttcgttctcaccaaatctta |
125 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||| ||| | | ||||||| | ||||| |
|
|
| T |
5051674 |
actttggtccaacaaatgaaagaagaagaaaaccagaaaag-tagcacttcaattttatctcaaagcgtaaactcctcgtatggttctcatccaatctcc |
5051576 |
T |
|
| Q |
126 |
atctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaagnnnnnnncatgtcttatattc |
225 |
Q |
| |
|
||||||||||||||| ||| |||||||| | | ||||||| ||| |||||||||| |||||||| |||||||||||||| ||| ||||||||| |
|
|
| T |
5051575 |
atctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccctaaactcgacaatataacaagataaaatcat-ccttatattc |
5051477 |
T |
|
| Q |
226 |
gagaattgtcggattttca |
244 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
5051476 |
gagaattgttggattttca |
5051458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 453
Target Start/End: Complemental strand, 5051458 - 5051299
Alignment:
| Q |
300 |
acatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtca-caataaacgtgaccg-gtactcgaaggccttgtttgtgaac |
397 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||| || || ||||||||| |||||||||||||| |||||||||||| | ||||| |||| |
|
|
| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
|
| Q |
398 |
ctta-----ttatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
453 |
Q |
| |
|
|||| ||||||||| | | || |||||| ||||||||||||||||||||||||||| |
|
|
| T |
5051358 |
cttattattttatagcattgatggaaacacaaa-aaagtatctttcaaccatcacaggttc |
5051299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University