View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9725_8 (Length: 312)
Name: NF9725_8
Description: NF9725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9725_8 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 40 - 310
Target Start/End: Complemental strand, 34433547 - 34433276
Alignment:
| Q |
40 |
taatgttatagattattttgaacagaatatttttataaggactaaaatgaacagtgaaaattatttaaactcaaaaagtatgtattatattggataaaat |
139 |
Q |
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| T |
34433547 |
taatgttatagattattttgaacagaatatttttataaggactaaaatgaacagtaaaaattatttaaactcaaaaagtatgtattatattggataaaat |
34433448 |
T |
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| Q |
140 |
aatacgtgtaatgtaaccnnnnnnn-atttgattttctatgcaggtaaggcagctcaacaagtaaatattcctattcctgaaggttgtacggatccaaat |
238 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34433447 |
aatacgtgtaatgtaaccttttttttatttgattttctatgcaggtaaggcagctcaacaagtaaatattcctattcctgaaggttgtacggatccaaat |
34433348 |
T |
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| Q |
239 |
gccaaaaacttcgacccaactgctagaagtgatgatggaacatgcttatacacatttgaataatctaagcat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34433347 |
gccaaaaacttcgacccaactgctagaagtgatgatggaacatgcttatacacatttgaataatctaagcat |
34433276 |
T |
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