View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9725_9 (Length: 311)
Name: NF9725_9
Description: NF9725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9725_9 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 36512321 - 36512616
Alignment:
| Q |
1 |
gagacttctccttatagatttgaatttgagcctcaagcagcctatatgcctcattcttatactcaaaattaccacttttgacgtgataaggaaagtcgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36512321 |
gagacttctccttatagatttgaatttgagcctcaagcagcctatatgcctcattcttatactcaaaattaccacttttgacgtgataaggaaagtcgga |
36512420 |
T |
|
| Q |
101 |
atcgtcatacttagagaacttagagaagtacttcacaaaatcttcttcaacggctttctgttccggtttcgattccacgagatctccatctgatttctgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36512421 |
atcgtcatacttagagaacttagagaagtacttcacaaaatcttcttcaacggctttctgttccggtttcgattccacgagatctccatctgatttctgt |
36512520 |
T |
|
| Q |
201 |
tccaatcccgaccctgattcctgtttcaacagtttctgttccattctctgttcaggttccaaattcagcccatttctccccttatttatgggcgat |
296 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36512521 |
tccaatcccgatcctgattcctgtttcaacagtttctgttccattctctgttcaggttccaaattcagcccatttctccccttatttatgggcgat |
36512616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 36808484 - 36808369
Alignment:
| Q |
1 |
gagacttctccttatagatttgaatttgagcctcaagcagcctatatgcctcattcttatactcaaaattaccacttttgacgtgataaggaaagtcgga |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| ||| ||| ||||||||||| |
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| T |
36808484 |
gagacttctccttatatatttgaatttgagcctt--gcttcctatatgcctcattcttatactcaaaattaccacgtttgccgtaatatggaaagtcgga |
36808387 |
T |
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| Q |
101 |
atcgtcatacttagagaa |
118 |
Q |
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|||||||| ||||||||| |
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| T |
36808386 |
atcgtcatgcttagagaa |
36808369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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