View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9725_low_1 (Length: 331)

Name: NF9725_low_1
Description: NF9725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9725_low_1
NF9725_low_1
[»] chr6 (1 HSPs)
chr6 (1-327)||(34791715-34792041)
[»] chr8 (1 HSPs)
chr8 (300-331)||(37784422-37784453)
[»] chr5 (3 HSPs)
chr5 (298-328)||(41192577-41192607)
chr5 (303-331)||(18695313-18695341)
chr5 (299-331)||(36548428-36548460)
[»] chr7 (3 HSPs)
chr7 (298-331)||(6822570-6822603)
chr7 (303-331)||(22692079-22692107)
chr7 (298-330)||(31982047-31982079)
[»] chr4 (5 HSPs)
chr4 (299-328)||(8485568-8485597)
chr4 (298-331)||(13267526-13267559)
chr4 (298-331)||(47998584-47998617)
chr4 (303-331)||(32696837-32696865)
chr4 (303-331)||(53463118-53463146)
[»] chr3 (2 HSPs)
chr3 (302-331)||(50652382-50652411)
chr3 (298-330)||(46815907-46815939)
[»] chr1 (5 HSPs)
chr1 (298-331)||(41564928-41564961)
chr1 (303-331)||(8577550-8577578)
chr1 (299-331)||(30530622-30530654)
chr1 (303-331)||(39669801-39669829)
chr1 (303-331)||(48634499-48634527)
[»] chr2 (2 HSPs)
chr2 (296-328)||(23045081-23045113)
chr2 (298-330)||(43057054-43057086)


Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 34791715 - 34792041
Alignment:
Q  1 ccaaaccaactactaatcccatttttaatctaatctgcttactattgccttagtggannnnnnngagtcatggtgctttagtggatattttcaatagagt 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||       |||| |||||||||||||||||||||||||||||||    
T  34791715 ccaaaccaactactaaccccatttttaatctaatctgcttactattgccttagtggatttttttgagtaatggtgctttagtggatattttcaatagagt 34791814  T
Q  101 tgtctaactttctctataatgattcctatatattatgtattgtcttatttcagcaccaatctaacattttttaggcaatcaccaatttaacatactatta 200  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34791815 tgtctaactttctctataatgatttcaatatattatgtattgtcttatttcagcaccaatctaacattttttaggcaatcaccaatttaacatactatta 34791914  T
Q  201 tcatctttgcaacactttttgttgaggtaaatgatggctaaatttgtcgttttgttttactaaatgaatttaccgatagtgtggacttcaactcgtgttt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34791915 tcatctttgcaacactttttgttgaggtaaatgatggctaaatttgtctttttgttttactaaatgaatttaccgatagtgtggacttcaactcgtgttt 34792014  T
Q  301 tattttagagaaatgatatttgtacaa 327  Q
    |||||||||||||||||||||||||||    
T  34792015 tattttagagaaatgatatttgtacaa 34792041  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 300 - 331
Target Start/End: Complemental strand, 37784453 - 37784422
Alignment:
Q  300 ttattttagagaaatgatatttgtacaaccat 331  Q
    ||||||||||||||||||||||||||||||||    
T  37784453 ttattttagagaaatgatatttgtacaaccat 37784422  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 328
Target Start/End: Original strand, 41192577 - 41192607
Alignment:
Q  298 ttttattttagagaaatgatatttgtacaac 328  Q
    |||||||||||||||||||||||||||||||    
T  41192577 ttttattttagagaaatgatatttgtacaac 41192607  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 331
Target Start/End: Original strand, 18695313 - 18695341
Alignment:
Q  303 ttttagagaaatgatatttgtacaaccat 331  Q
    |||||||||||||||||||||||||||||    
T  18695313 ttttagagaaatgatatttgtacaaccat 18695341  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Complemental strand, 36548460 - 36548428
Alignment:
Q  299 tttattttagagaaatgatatttgtacaaccat 331  Q
    |||||||||||||||||||||||||| ||||||    
T  36548460 tttattttagagaaatgatatttgtataaccat 36548428  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 331
Target Start/End: Complemental strand, 6822603 - 6822570
Alignment:
Q  298 ttttattttagagaaatgatatttgtacaaccat 331  Q
    |||||||| |||||||||||||||||||||||||    
T  6822603 ttttatttaagagaaatgatatttgtacaaccat 6822570  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 331
Target Start/End: Original strand, 22692079 - 22692107
Alignment:
Q  303 ttttagagaaatgatatttgtacaaccat 331  Q
    |||||||||||||||||||||||||||||    
T  22692079 ttttagagaaatgatatttgtacaaccat 22692107  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 31982047 - 31982079
Alignment:
Q  298 ttttattttagagaaatgatatttgtacaacca 330  Q
    ||||||||| |||||||||||||||||||||||    
T  31982047 ttttatttttgagaaatgatatttgtacaacca 31982079  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 328
Target Start/End: Original strand, 8485568 - 8485597
Alignment:
Q  299 tttattttagagaaatgatatttgtacaac 328  Q
    ||||||||||||||||||||||||||||||    
T  8485568 tttattttagagaaatgatatttgtacaac 8485597  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 331
Target Start/End: Complemental strand, 13267559 - 13267526
Alignment:
Q  298 ttttattttagagaaatgatatttgtacaaccat 331  Q
    |||||| |||||||||||||||||||||||||||    
T  13267559 ttttatgttagagaaatgatatttgtacaaccat 13267526  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 331
Target Start/End: Original strand, 47998584 - 47998617
Alignment:
Q  298 ttttattttagagaaatgatatttgtacaaccat 331  Q
    |||| |||||||||||||||||||||||||||||    
T  47998584 tttttttttagagaaatgatatttgtacaaccat 47998617  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 331
Target Start/End: Complemental strand, 32696865 - 32696837
Alignment:
Q  303 ttttagagaaatgatatttgtacaaccat 331  Q
    |||||||||||||||||||||||||||||    
T  32696865 ttttagagaaatgatatttgtacaaccat 32696837  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 331
Target Start/End: Complemental strand, 53463146 - 53463118
Alignment:
Q  303 ttttagagaaatgatatttgtacaaccat 331  Q
    |||||||||||||||||||||||||||||    
T  53463146 ttttagagaaatgatatttgtacaaccat 53463118  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 331
Target Start/End: Original strand, 50652382 - 50652411
Alignment:
Q  302 attttagagaaatgatatttgtacaaccat 331  Q
    ||||||||||||||||||||||||||||||    
T  50652382 attttagagaaatgatatttgtacaaccat 50652411  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 46815939 - 46815907
Alignment:
Q  298 ttttattttagagaaatgatatttgtacaacca 330  Q
    ||||||||| |||||||||||||||||||||||    
T  46815939 ttttatttttgagaaatgatatttgtacaacca 46815907  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 331
Target Start/End: Complemental strand, 41564961 - 41564928
Alignment:
Q  298 ttttattttagagaaatgatatttgtacaaccat 331  Q
    ||||||| ||||||||||||||||||||||||||    
T  41564961 ttttattgtagagaaatgatatttgtacaaccat 41564928  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 331
Target Start/End: Complemental strand, 8577578 - 8577550
Alignment:
Q  303 ttttagagaaatgatatttgtacaaccat 331  Q
    |||||||||||||||||||||||||||||    
T  8577578 ttttagagaaatgatatttgtacaaccat 8577550  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Complemental strand, 30530654 - 30530622
Alignment:
Q  299 tttattttagagaaatgatatttgtacaaccat 331  Q
    ||||||||||||||||||||||| |||||||||    
T  30530654 tttattttagagaaatgatatttatacaaccat 30530622  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 331
Target Start/End: Original strand, 39669801 - 39669829
Alignment:
Q  303 ttttagagaaatgatatttgtacaaccat 331  Q
    |||||||||||||||||||||||||||||    
T  39669801 ttttagagaaatgatatttgtacaaccat 39669829  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 331
Target Start/End: Complemental strand, 48634527 - 48634499
Alignment:
Q  303 ttttagagaaatgatatttgtacaaccat 331  Q
    |||||||||||||||||||||||||||||    
T  48634527 ttttagagaaatgatatttgtacaaccat 48634499  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 328
Target Start/End: Original strand, 23045081 - 23045113
Alignment:
Q  296 tgttttattttagagaaatgatatttgtacaac 328  Q
    |||||| ||||||||||||||||||||||||||    
T  23045081 tgtttttttttagagaaatgatatttgtacaac 23045113  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 43057054 - 43057086
Alignment:
Q  298 ttttattttagagaaatgatatttgtacaacca 330  Q
    ||||||||||||||||||||||||| |||||||    
T  43057054 ttttattttagagaaatgatatttgaacaacca 43057086  T

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